Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12o24
         (154 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-9|AAO21383.1|  267|Caenorhabditis elegans Elongation fact...    96   3e-21
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...    96   3e-21
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...    96   3e-21
Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical pr...    72   6e-14
Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical pr...    72   6e-14
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    64   2e-11
U80437-9|AAN84843.1|  439|Caenorhabditis elegans Tu elongation f...    48   1e-06
AB010028-1|BAA31345.1|  439|Caenorhabditis elegans mitochondrial...    48   1e-06
U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...    43   3e-05
D38472-1|BAA07492.1|  495|Caenorhabditis elegans elongation fact...    41   1e-04
D38471-1|BAA07491.1|  496|Caenorhabditis elegans elongation fact...    41   1e-04
AC024859-25|AAK29979.1|  496|Caenorhabditis elegans Tu elongatio...    41   1e-04
AF040643-5|AAT81201.1|  299|Caenorhabditis elegans Hypothetical ...    25   5.5  
AF003131-6|AAB54131.2|  166|Caenorhabditis elegans Hypothetical ...    25   5.5  
AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical...    25   7.3  
CU457740-1|CAM36331.1|  122|Caenorhabditis elegans Hypothetical ...    25   9.6  

>U51994-9|AAO21383.1|  267|Caenorhabditis elegans Elongation factor
           protein 4, isoformc protein.
          Length = 267

 Score = 96.3 bits (229), Expect = 3e-21
 Identities = 46/50 (92%), Positives = 47/50 (94%)
 Frame = +3

Query: 3   FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGVKQ 152
           FIKNMITGTSQADCAVL+VA GTGEFEAGIS NGQTREHALLA TLGVKQ
Sbjct: 98  FIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQ 147


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score = 96.3 bits (229), Expect = 3e-21
 Identities = 46/50 (92%), Positives = 47/50 (94%)
 Frame = +3

Query: 3   FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGVKQ 152
           FIKNMITGTSQADCAVL+VA GTGEFEAGIS NGQTREHALLA TLGVKQ
Sbjct: 98  FIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQ 147


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score = 96.3 bits (229), Expect = 3e-21
 Identities = 46/50 (92%), Positives = 47/50 (94%)
 Frame = +3

Query: 3   FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGVKQ 152
           FIKNMITGTSQADCAVL+VA GTGEFEAGIS NGQTREHALLA TLGVKQ
Sbjct: 98  FIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQ 147


>Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical
           protein K07A12.4b protein.
          Length = 592

 Score = 71.7 bits (168), Expect = 6e-14
 Identities = 34/50 (68%), Positives = 38/50 (76%)
 Frame = +3

Query: 3   FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGVKQ 152
           FI NMITGTSQAD A+L+V A TGEFE G    GQT+EHALL  +LGV Q
Sbjct: 261 FISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQ 310


>Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical
           protein K07A12.4a protein.
          Length = 610

 Score = 71.7 bits (168), Expect = 6e-14
 Identities = 34/50 (68%), Positives = 38/50 (76%)
 Frame = +3

Query: 3   FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGVKQ 152
           FI NMITGTSQAD A+L+V A TGEFE G    GQT+EHALL  +LGV Q
Sbjct: 279 FISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQ 328


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 28/49 (57%), Positives = 35/49 (71%)
 Frame = +3

Query: 3   FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGVK 149
           F+ NMI G +QAD AVL+++A  GEFE G    GQTREH++L  T GVK
Sbjct: 200 FVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVK 248


>U80437-9|AAN84843.1|  439|Caenorhabditis elegans Tu elongation
           factor (ef-tu), mitochondrialprotein 2 protein.
          Length = 439

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 27/49 (55%), Positives = 32/49 (65%)
 Frame = +3

Query: 3   FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGVK 149
           FIKNMI GTSQ D AVL++AA  G  E       QT+EH +LA  +GVK
Sbjct: 121 FIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVK 162


>AB010028-1|BAA31345.1|  439|Caenorhabditis elegans mitochondrial
           elongation factorTu homologue protein.
          Length = 439

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 27/49 (55%), Positives = 32/49 (65%)
 Frame = +3

Query: 3   FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGVK 149
           FIKNMI GTSQ D AVL++AA  G  E       QT+EH +LA  +GVK
Sbjct: 121 FIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVK 162


>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 19/20 (95%), Positives = 20/20 (100%)
 Frame = +3

Query: 3   FIKNMITGTSQADCAVLIVA 62
           FIKNMITGTSQADCAVL+VA
Sbjct: 98  FIKNMITGTSQADCAVLVVA 117


>D38472-1|BAA07492.1|  495|Caenorhabditis elegans elongation factor
           Tu homologueprecursor protein.
          Length = 495

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 24/48 (50%), Positives = 30/48 (62%)
 Frame = +3

Query: 3   FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGV 146
           +IKNMITG +Q + A+L+VAA  G          QTREH LLA  +GV
Sbjct: 125 YIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGV 165


>D38471-1|BAA07491.1|  496|Caenorhabditis elegans elongation factor
           Tu homologueprecursor protein.
          Length = 496

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 24/48 (50%), Positives = 30/48 (62%)
 Frame = +3

Query: 3   FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGV 146
           +IKNMITG +Q + A+L+VAA  G          QTREH LLA  +GV
Sbjct: 126 YIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGV 166


>AC024859-25|AAK29979.1|  496|Caenorhabditis elegans Tu elongation
           factor (ef-tu), mitochondrialprotein 1 protein.
          Length = 496

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 24/48 (50%), Positives = 30/48 (62%)
 Frame = +3

Query: 3   FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGV 146
           +IKNMITG +Q + A+L+VAA  G          QTREH LLA  +GV
Sbjct: 126 YIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGV 166


>AF040643-5|AAT81201.1|  299|Caenorhabditis elegans Hypothetical
           protein F14D2.15 protein.
          Length = 299

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = -3

Query: 149 FDTEGESEQGMLTGLTVXRDTSFEF-----TGTGSYDEHSAISLRGSCDH 15
           + +E E   G+   L V RD  F +     +GTGS + H   ++R   DH
Sbjct: 26  YTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDH 75


>AF003131-6|AAB54131.2|  166|Caenorhabditis elegans Hypothetical
           protein C09D1.2 protein.
          Length = 166

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 152 LFDTEGESEQGMLTGLTVXRDTSFEFTGTGSY 57
           L   E ESE   +  L   +D +FEF   G Y
Sbjct: 69  LTSIESESENQFVMNLAKEKDANFEFIYLGGY 100


>AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical
           protein Y102A5C.23 protein.
          Length = 304

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 84  LRIHRYRQLR*AQRNQPERFL 22
           + I +Y  LR AQR+QP +++
Sbjct: 186 ISIRKYANLRWAQRSQPHKYI 206


>CU457740-1|CAM36331.1|  122|Caenorhabditis elegans Hypothetical
           protein C50E10.1 protein.
          Length = 122

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 91  IPASNSPVPAATMSTAQSA*EVPVIMF 11
           IP+ N P  +AT ST+    E+P I F
Sbjct: 60  IPSPNPPATSATSSTSPEE-EIPCICF 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,188
Number of Sequences: 27780
Number of extensions: 40450
Number of successful extensions: 117
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 12,740,198
effective HSP length: 31
effective length of database: 11,879,018
effective search space used: 225701342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)