Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12o24
         (154 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   101   6e-25
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   101   6e-25
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   101   6e-25
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   100   3e-24
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   5.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            18   9.9  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  101 bits (243), Expect = 6e-25
 Identities = 49/50 (98%), Positives = 49/50 (98%)
 Frame = +3

Query: 3   FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGVKQ 152
           FIKNMITGTSQADCAVLIVAAGTGEFEAGIS NGQTREHALLAFTLGVKQ
Sbjct: 25  FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 74


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  101 bits (243), Expect = 6e-25
 Identities = 49/50 (98%), Positives = 49/50 (98%)
 Frame = +3

Query: 3   FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGVKQ 152
           FIKNMITGTSQADCAVLIVAAGTGEFEAGIS NGQTREHALLAFTLGVKQ
Sbjct: 41  FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 90


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  101 bits (243), Expect = 6e-25
 Identities = 49/50 (98%), Positives = 49/50 (98%)
 Frame = +3

Query: 3   FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGVKQ 152
           FIKNMITGTSQADCAVLIVAAGTGEFEAGIS NGQTREHALLAFTLGVKQ
Sbjct: 98  FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 147


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 99.5 bits (237), Expect = 3e-24
 Identities = 48/50 (96%), Positives = 48/50 (96%)
 Frame = +3

Query: 3   FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGVKQ 152
           FIKNMITGTSQADCAVLIVAAG GEFEAGIS NGQTREHALLAFTLGVKQ
Sbjct: 98  FIKNMITGTSQADCAVLIVAAGIGEFEAGISKNGQTREHALLAFTLGVKQ 147


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 116 LTGLTVXRDTSFEFTGTGSYDEHSAISLR 30
           LTGLTV R  +  +    S  E    S R
Sbjct: 257 LTGLTVLRTFNASYNSLDSLPEGLFASTR 285


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 5/5 (100%), Positives = 5/5 (100%)
 Frame = +2

Query: 131 FHPRC 145
           FHPRC
Sbjct: 152 FHPRC 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,037
Number of Sequences: 438
Number of extensions: 400
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used:  2664060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)