Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12o19
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 72 4e-13
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 72 5e-13
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 52 3e-07
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 52 3e-07
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 41 8e-04
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 41 0.001
05_03_0115 - 8544590-8544958,8545408-8545503,8561954-8562505,857... 33 0.22
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 30 1.5
08_02_1543 + 27783063-27783182,27784321-27784485,27784577-277846... 30 2.0
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687... 29 2.7
06_03_0508 - 21607706-21608863,21608943-21609090,21609411-216095... 29 2.7
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 29 4.7
06_03_0947 + 26248378-26248494,26248600-26248764,26248843-262489... 28 8.2
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 28 8.2
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 28 8.2
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 72.1 bits (169), Expect = 4e-13
Identities = 32/79 (40%), Positives = 50/79 (63%)
Frame = +1
Query: 4 KQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVL 183
K +R G+KG+ AG+ISPI+++ H+P +CEE ++ Y Y PS++D+ A T R VL
Sbjct: 54 KSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGTTKRPTCCVL 113
Query: 184 VKEHEDYKDLYEEVKSEIK 240
V +L E+VK ++K
Sbjct: 114 VLTKPAKGELEEDVKEKLK 132
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 71.7 bits (168), Expect = 5e-13
Identities = 32/79 (40%), Positives = 49/79 (62%)
Frame = +1
Query: 4 KQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVL 183
K +R G KG+ AG+ISPI+++ H+P +CEE ++ Y Y PS++D+ A T R VL
Sbjct: 54 KSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGTTKRPTCCVL 113
Query: 184 VKEHEDYKDLYEEVKSEIK 240
V ++ EEVK ++K
Sbjct: 114 VMTKPAKGEINEEVKEKLK 132
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = +1
Query: 4 KQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVL 183
K L G V A D P+EI+ HLP + E+K+V Y + PS++ +G A G R I
Sbjct: 42 KTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACS 101
Query: 184 VKEHE--DYKDLYEEVKSEIKLL 246
V +E + +D +K I+ L
Sbjct: 102 VTSNEASNLRDPINNLKVAIEKL 124
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/65 (38%), Positives = 35/65 (53%)
Frame = +1
Query: 4 KQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVL 183
K L G V A D P+EI+ HLP + E+K+V Y + PS++ +G A G R I
Sbjct: 44 KTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACS 103
Query: 184 VKEHE 198
V +E
Sbjct: 104 VTSNE 108
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = +1
Query: 31 MVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKD 210
+V A D+ PIE++ LPA+C + +V YC + +G+ + ++ L + K
Sbjct: 146 LVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKL 205
Query: 211 LYEEVKSEIK 240
+ ++ IK
Sbjct: 206 EFSKILEAIK 215
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +1
Query: 31 MVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVL--VKEHE-- 198
+V A D+ PIE++ LPA+C + ++ YC + +G+ + ++ L VK +
Sbjct: 131 LVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKL 190
Query: 199 DYKDLYEEVKS 231
++ + E +KS
Sbjct: 191 EFSKILEAIKS 201
>05_03_0115 -
8544590-8544958,8545408-8545503,8561954-8562505,
8576247-8576312,8576623-8576694,8576967-8577082,
8577743-8577838,8578498-8578765
Length = 544
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +1
Query: 136 DIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLLGH 252
++G+A+G +R LVKE+ D K E++KS+I+ L H
Sbjct: 113 ELGSAVGRLRDKEEHLVKEYRDLKLEIEQIKSDIQSLRH 151
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 31 MVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPS 129
+V A D+ PIE++ LPA+C + ++ + T S
Sbjct: 130 LVVIAHDVDPIELVVWLPALCRKMEIVHKKTAS 162
>08_02_1543 +
27783063-27783182,27784321-27784485,27784577-27784686,
27784771-27784876,27784952-27785050,27785450-27786607
Length = 585
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 282 IRILFIYLQWMTEQFYFTFNFLVQIFIILM 193
I + FI QFY+ F FL +FIIL+
Sbjct: 459 IELFFILTSIWLHQFYYIFGFLFLVFIILI 488
>09_06_0252 +
21867179-21867283,21868362-21868526,21868621-21868730,
21868802-21868904,21868998-21869110,21869204-21869357,
21869476-21870633
Length = 635
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 282 IRILFIYLQWMTEQFYFTFNFLVQIFIILM 193
I + FI QFY+ F FL +F+IL+
Sbjct: 509 IELFFILTSIWLHQFYYIFGFLFLVFVILI 538
>06_03_0508 -
21607706-21608863,21608943-21609090,21609411-21609523,
21609612-21609705,21609841-21609950,21610093-21610257,
21611660-21611800
Length = 642
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 282 IRILFIYLQWMTEQFYFTFNFLVQIFIILM 193
I + FI QFY+ F FL +FIIL+
Sbjct: 516 IELFFILTSIWLNQFYYIFGFLFIVFIILI 545
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 276 ILFIYLQWMTEQFYFTFNFLVQIFIILMFFNKYHD 172
I I + W+ FNFL I+I+ + KY D
Sbjct: 124 IKVILILWVVSYIGMLFNFLTLIYIVPPLYEKYQD 158
>06_03_0947 +
26248378-26248494,26248600-26248764,26248843-26248952,
26249065-26249179,26249310-26249408,26249485-26249694,
26249802-26250965
Length = 659
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 282 IRILFIYLQWMTEQFYFTFNFLVQIFIILM 193
I + FI QFY+ F FL +F IL+
Sbjct: 533 IELFFILTSIWLHQFYYIFGFLFLVFAILV 562
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 186 NKYHDASSHCTHGGTDILPTWSVT 115
+ YH + CTHGG + P+ +VT
Sbjct: 130 SSYHKSCFRCTHGGCTLSPSNNVT 153
>05_05_0156 +
22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 85 AVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEH 195
A C+ VQ+CY P R+ + A M + +L K H
Sbjct: 446 ATCKRGFVQFCYEPIREIMNACMNSKHKLWPMLEKIH 482
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,470,280
Number of Sequences: 37544
Number of extensions: 348847
Number of successful extensions: 660
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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