Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12o19
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 90 2e-18
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 55 4e-08
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 40 0.002
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 40 0.002
Z81041-11|CAJ90515.1| 713|Caenorhabditis elegans Hypothetical p... 27 9.8
Z81041-10|CAB02785.3| 743|Caenorhabditis elegans Hypothetical p... 27 9.8
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 27 9.8
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 27 9.8
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 27 9.8
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 27 9.8
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 27 9.8
AF002196-3|AAP68957.1| 916|Caenorhabditis elegans Hypothetical ... 27 9.8
AF002196-2|AAP68956.1| 915|Caenorhabditis elegans Hypothetical ... 27 9.8
AF002196-1|AAP68955.1| 913|Caenorhabditis elegans Hypothetical ... 27 9.8
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 89.8 bits (213), Expect = 2e-18
Identities = 36/82 (43%), Positives = 57/82 (69%)
Frame = +1
Query: 1 EKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMV 180
+K+LR EKG+ AG++SPI++ H+P +CEEK++ Y Y PSR+ +G A+G R I++
Sbjct: 77 QKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPSILI 136
Query: 181 LVKEHEDYKDLYEEVKSEIKLL 246
VK D+K+LY+EV ++ L
Sbjct: 137 FVKPSGDFKELYDEVAEALRHL 158
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 55.2 bits (127), Expect = 4e-08
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = +1
Query: 4 KQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVL 183
K L G ++ A D P+EI+ HLP +CE+K+V Y + S+ +G A G R I
Sbjct: 44 KTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAAS 103
Query: 184 VKEHE--DYKDLYEEVKSEIKLL 246
+ ++E K +++K +++ L
Sbjct: 104 ITQNEGSQLKSQIQKIKEDVEKL 126
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +1
Query: 31 MVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYK 207
+V A D++P+EI+ HLPA+C + +V Y + +G + + LV + + K
Sbjct: 155 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDK 213
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +1
Query: 31 MVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYK 207
+V A D++P+EI+ HLPA+C + +V Y + +G + + LV + + K
Sbjct: 135 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDK 193
>Z81041-11|CAJ90515.1| 713|Caenorhabditis elegans Hypothetical
protein C27A7.3b protein.
Length = 713
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -2
Query: 627 TIKYIENEVVLTILDTMSLKAYGKFIFVLSSFCTHQCKHNISD 499
TIK+++ V L+I LK YGK +FVLS + I+D
Sbjct: 572 TIKFVDIWVPLSIKTDEYLKHYGK-LFVLSGLAVDRNLDGIAD 613
>Z81041-10|CAB02785.3| 743|Caenorhabditis elegans Hypothetical
protein C27A7.3a protein.
Length = 743
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -2
Query: 627 TIKYIENEVVLTILDTMSLKAYGKFIFVLSSFCTHQCKHNISD 499
TIK+++ V L+I LK YGK +FVLS + I+D
Sbjct: 602 TIKFVDIWVPLSIKTDEYLKHYGK-LFVLSGLAVDRNLDGIAD 643
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 109 QYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLL 246
+Y Y R +G G + +L+K+H+D D + IK+L
Sbjct: 748 RYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVHDELQNFDQHIKVL 793
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 109 QYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLL 246
+Y Y R +G G + +L+K+H+D D + IK+L
Sbjct: 748 RYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVHDELQNFDQHIKVL 793
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 109 QYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLL 246
+Y Y R +G G + +L+K+H+D D + IK+L
Sbjct: 748 RYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVHDELQNFDQHIKVL 793
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 109 QYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLL 246
+Y Y R +G G + +L+K+H+D D + IK+L
Sbjct: 748 RYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVHDELQNFDQHIKVL 793
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 109 QYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLL 246
+Y Y R +G G + +L+K+H+D D + IK+L
Sbjct: 748 RYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVHDELQNFDQHIKVL 793
>AF002196-3|AAP68957.1| 916|Caenorhabditis elegans Hypothetical
protein C09D4.4c protein.
Length = 916
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 175 MVLVKEHEDYKDLYEEVKSEIKLLGHP 255
M +VK HE +K E++++E + L HP
Sbjct: 394 MPVVKAHEKHKSFREKLRNETRKLIHP 420
>AF002196-2|AAP68956.1| 915|Caenorhabditis elegans Hypothetical
protein C09D4.4b protein.
Length = 915
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 175 MVLVKEHEDYKDLYEEVKSEIKLLGHP 255
M +VK HE +K E++++E + L HP
Sbjct: 391 MPVVKAHEKHKSFREKLRNETRKLIHP 417
>AF002196-1|AAP68955.1| 913|Caenorhabditis elegans Hypothetical
protein C09D4.4a protein.
Length = 913
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 175 MVLVKEHEDYKDLYEEVKSEIKLLGHP 255
M +VK HE +K E++++E + L HP
Sbjct: 391 MPVVKAHEKHKSFREKLRNETRKLIHP 417
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,265,207
Number of Sequences: 27780
Number of extensions: 348655
Number of successful extensions: 855
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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