Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12o14
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0316 + 3479574-3482679,3482766-3483127 31 0.43
03_02_0824 + 11556128-11556989,11557515-11559134,11559236-11559825 31 0.43
04_04_0881 + 29055724-29059197 30 0.75
07_01_0113 + 840866-841574,841687-842210,842391-842840,843541-84... 29 1.3
11_06_0091 + 19967390-19969825 29 1.7
01_01_0361 + 2838979-2841745,2841897-2842285 29 2.3
10_01_0105 + 1287423-1289924 28 3.0
01_01_0490 + 3620523-3623403,3623524-3623996 28 3.0
10_01_0318 + 3493913-3496976,3497064-3497392 28 4.0
10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386 27 5.3
11_06_0115 + 20288220-20288303,20289223-20289706,20290160-202903... 27 7.0
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361... 27 7.0
12_01_0808 + 7418878-7420476 27 9.2
11_06_0129 - 20397179-20397537,20397749-20400497 27 9.2
11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352... 27 9.2
10_08_0727 - 20133293-20135701 27 9.2
10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593 27 9.2
10_01_0099 - 1202668-1203023,1203097-1206037 27 9.2
05_06_0124 - 25822176-25822633,25822738-25825420 27 9.2
04_04_0584 + 26381220-26381232,26381583-26381594,26381921-263820... 27 9.2
04_03_0396 + 15361501-15361663,15361726-15361806,15361909-15362054 27 9.2
03_02_0482 + 8798931-8799024,8799118-8799253,8799435-8799506,879... 27 9.2
01_07_0167 - 41613834-41613842,41614060-41615056,41615456-416163... 27 9.2
>10_01_0316 + 3479574-3482679,3482766-3483127
Length = 1155
Score = 31.1 bits (67), Expect = 0.43
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +2
Query: 20 CRKLMRIYLNTDTFSGQLPAYL 85
CR L+ +YLN++ F+G +PA++
Sbjct: 334 CRCLIMLYLNSNNFTGSIPAFI 355
>03_02_0824 + 11556128-11556989,11557515-11559134,11559236-11559825
Length = 1023
Score = 31.1 bits (67), Expect = 0.43
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 11 DLGCRKLMRIY-LNTDTFSGQLPAYLTHYVNYPHKNL 118
DLG +++ L+ + FSGQ+PA LT N H NL
Sbjct: 95 DLGSMTSLQLLDLSNNMFSGQIPAELTKLANLGHLNL 131
>04_04_0881 + 29055724-29059197
Length = 1157
Score = 30.3 bits (65), Expect = 0.75
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 17 GCRKLMRIYLNTDTFSGQLPAYL 85
G R+L +YL ++FSGQ+PA L
Sbjct: 414 GLRRLREVYLGGNSFSGQIPASL 436
>07_01_0113 +
840866-841574,841687-842210,842391-842840,843541-843699
Length = 613
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 23 RKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQN 130
R L + L+ +TFSG +PA +T+ ++ + +L D N
Sbjct: 340 RDLQILRLSHNTFSGSIPAGITNLLSLQYLDLSDNN 375
>11_06_0091 + 19967390-19969825
Length = 811
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 17 GCRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQNWKRF 142
G RK+ + ++ ++FSG P++L + N + D +W +F
Sbjct: 479 GMRKMSILRISNNSFSGNFPSFLQGWTNL---SFLDLSWNKF 517
>01_01_0361 + 2838979-2841745,2841897-2842285
Length = 1051
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 20 CRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQN 130
C +L ++ ++ ++FSGQLP + + HK D N
Sbjct: 347 CSQLQQLVISDNSFSGQLPNSVVNLSTTLHKLYLDNN 383
>10_01_0105 + 1287423-1289924
Length = 833
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 38 IYLNTDTFSGQLPAYLTHYVNYPHKNLCDQN 130
++L + F+G +P +TH + NL D N
Sbjct: 550 LHLGHNMFNGDIPVNITHLTQLQYLNLADNN 580
>01_01_0490 + 3620523-3623403,3623524-3623996
Length = 1117
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 8 PDLG-CRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQN 130
P+LG C L IYL + SG +PA L N + L N
Sbjct: 268 PELGRCTSLENIYLYENALSGSIPAQLGGLANLKNLLLWQNN 309
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 27.9 bits (59), Expect = 4.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 20 CRKLMRIYLNTDTFSGQLPAYL 85
CR L +YLN + F+G +P ++
Sbjct: 320 CRSLTMLYLNGNRFTGSIPKFI 341
>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
Length = 1066
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 20 CRKLMRIYLNTDTFSGQLPAYL 85
CRKL + +N++ F+G LP YL
Sbjct: 441 CRKLSVLCINSNRFTGILPDYL 462
>11_06_0115 +
20288220-20288303,20289223-20289706,20290160-20290393,
20291811-20292770,20292931-20293404,20293406-20294664
Length = 1164
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 17 GCRKLMRIYLNTDTFSGQLPAYL 85
GC++LM + L+ F G+LP+++
Sbjct: 190 GCKQLMHLDLSQSKFHGRLPSWI 212
>11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,
3611984-3612217,3614113-3614138,3614446-3614633,
3615707-3617670,3617938-3618423,3618527-3618894
Length = 2207
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 8 PDLG-CRKLMRIYLNTDTFSGQLPAYLTH 91
P LG L ++LNT+ SGQ+P L H
Sbjct: 1375 PSLGNLTSLEHLFLNTNQLSGQIPPSLGH 1403
>12_01_0808 + 7418878-7420476
Length = 532
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 20 CRKLMRIYLNTDTFSGQLPA 79
CR L R+ L ++FSG++PA
Sbjct: 173 CRSLQRLILAGNSFSGEVPA 192
>11_06_0129 - 20397179-20397537,20397749-20400497
Length = 1035
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 17 GCRKLMRIYLNTDTFSGQLPA 79
GC KLM ++L + G++PA
Sbjct: 143 GCTKLMTLHLGNNQLQGEIPA 163
>11_01_0456 +
3522599-3523921,3524005-3524027,3524097-3525265,
3525373-3525737
Length = 959
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 8 PDLGCRKLMR-IYLNTDTFSGQLPAYLTH 91
P LG ++ +YL+T++F+G++P L H
Sbjct: 92 PSLGNLTFLKFLYLDTNSFTGEIPLSLGH 120
>10_08_0727 - 20133293-20135701
Length = 802
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 17 GCRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQNW 133
GCR L + +++FSG P L VN + N+ N+
Sbjct: 248 GCRSLDLFDVGSNSFSGAAPFGLLALVNITYFNVSSNNF 286
>10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593
Length = 1278
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 8 PDLG-CRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNL 118
P+LG KL +YL T+ F+G +PA L N +L
Sbjct: 400 PELGKASKLNILYLFTNKFTGSIPAELGELENLTELDL 437
>10_01_0099 - 1202668-1203023,1203097-1206037
Length = 1098
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Frame = +2
Query: 2 SGP---DLG-CRKLMRIYLNTDTFSGQLPA 79
SGP +LG C KL + +N + FSG LPA
Sbjct: 603 SGPIPEELGRCTKLQLLRINNNHFSGNLPA 632
>05_06_0124 - 25822176-25822633,25822738-25825420
Length = 1046
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 29 LMRIYLNTDTFSGQLPAYLTHYVNYPHKN 115
L R+Y++ + FSG+LPA T + +N
Sbjct: 465 LTRLYIHNNRFSGRLPATATKLQKFNAEN 493
>04_04_0584 +
26381220-26381232,26381583-26381594,26381921-26382028,
26382137-26382217,26382320-26382465,26382550-26382624,
26382709-26382756,26382845-26382994,26383081-26383140,
26383394-26384274,26384674-26385670,26385887-26385895
Length = 859
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 8 PDLGCRKLMRI--YLNTDTFSGQLPAYLTHYVNYPHKNLCDQ 127
P LGCRK+ + N+ S + + VNY + L DQ
Sbjct: 69 PHLGCRKIQHVGKNFNSPELSNTIGTIASEVVNYGGQMLYDQ 110
>04_03_0396 + 15361501-15361663,15361726-15361806,15361909-15362054
Length = 129
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 8 PDLGCRKLMRI--YLNTDTFSGQLPAYLTHYVNYPHKNLCDQ 127
P LGCRK+ + N+ S + + VNY + L DQ
Sbjct: 79 PHLGCRKIQHVGKNFNSPELSNTIGTIASEVVNYGGQMLYDQ 120
>03_02_0482 +
8798931-8799024,8799118-8799253,8799435-8799506,
8799583-8799654,8799798-8799869,8800133-8800204,
8800530-8800627,8800892-8801062,8801141-8801473,
8802494-8802739,8802884-8803017,8803132-8803344
Length = 570
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 8 PDLG-CRKLMRIYLNTDTFSGQLPA 79
P+LG C KL ++YL + SG +P+
Sbjct: 114 PELGNCTKLQQLYLQGNYLSGHIPS 138
>01_07_0167 -
41613834-41613842,41614060-41615056,41615456-41616336,
41616437-41616508,41616590-41616649,41616736-41616885,
41616974-41617021,41617107-41617181,41617266-41617411,
41617514-41617594,41617703-41617810,41618046-41618057,
41618137-41618148,41618499-41618546,41619021-41619105
Length = 927
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 8 PDLGCRKLMRI--YLNTDTFSGQLPAYLTHYVNYPHKNLCDQ 127
P LGCRK+ + N+ S + + VNY + L DQ
Sbjct: 113 PHLGCRKIQHVGKNFNSPELSNTIGTIASEVVNYGGQMLYDQ 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,020,736
Number of Sequences: 37544
Number of extensions: 109087
Number of successful extensions: 468
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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