Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12o13
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 196 2e-51
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 54 2e-08
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 31 0.22
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 30 0.38
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 28 1.5
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 28 1.5
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 27 2.7
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po... 27 3.6
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 4.7
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 26 6.2
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 8.2
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 25 8.2
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 25 8.2
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 25 8.2
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 196 bits (479), Expect = 2e-51
Identities = 91/155 (58%), Positives = 118/155 (76%)
Frame = +1
Query: 253 MVLADLGRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVI 432
MV ADLGR++ +AL S+AT +NEE+++++LK IC ALLE DVN+RLV+ LR N++ I
Sbjct: 1 MVFADLGRRLNSALGDFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKI 60
Query: 433 DFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVKGKPNVIMFVGLQGSGKTTTCTK 612
+ + G+N +R++Q AVF EL LVDP V + P KG+P+VIM VGLQGSGKTTTC+K
Sbjct: 61 NVSTLPQGINGKRIVQKAVFDELCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSK 120
Query: 613 LAYHYLRKNWKSCLVCADTFRAGAYDPVKQNCTKA 717
LA HY R+ KSCLV ADTFRAGA+D +KQN KA
Sbjct: 121 LALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKA 155
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 54.4 bits (125), Expect = 2e-08
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 8/132 (6%)
Frame = +1
Query: 319 INEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQSAVFKE 498
+ EE L+ +LKQ+ L + +V + L E+V+A + ++ + + A
Sbjct: 256 LKEEDLSPILKQMQEHLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTVNKAFRDR 315
Query: 499 LVKLVDPG--------VKPYQPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRKNWKSCL 654
L +++ P ++ + + +P I +G+ G GK+TT K+AY L N++ +
Sbjct: 316 LTQILTPSTSLDLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILV 375
Query: 655 VCADTFRAGAYD 690
DTFR+GA +
Sbjct: 376 AACDTFRSGAIE 387
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 30.7 bits (66), Expect = 0.22
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 550 KPNVIMFVGLQGSGKTTTCTKLAYHYLRKN 639
KP I+ VG+ GSGKTT +L H KN
Sbjct: 7 KPCAIIVVGMAGSGKTTFMQQLNAHLHSKN 36
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 29.9 bits (64), Expect = 0.38
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 487 VFKELVKLVDPGVKPYQPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRKN 639
+ +++K ++ KP +G+P ++ G QGSGK+T + L RKN
Sbjct: 7 IVDKILKFLEKQPKP----EGRPFILGISGPQGSGKSTLASALDTELTRKN 53
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 340 SMLKQICAALLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQ 480
S Q+ ALL+ D + LV+NL +V + DE+ + +R ++
Sbjct: 807 SKTPQVVGALLDIDCDEELVQNLLMSVVGQVPVDELVEEVERRNRLK 853
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 337 NSMLKQICAALLEADVNIRLVKNLRENVRA--VIDFDEMAGGLNKRRMIQSAVFKELVKL 510
NS++++I EA N R N RA + M G N +R ++SAVF VKL
Sbjct: 131 NSVVEKISQKNQEARSRANSRVNSRANSRANSSVSLAGMDGSPNWKRKMKSAVFGSRVKL 190
Query: 511 VD 516
D
Sbjct: 191 ND 192
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 442 EMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVK-GKPNVIMFVGLQGSGKTTTCTKLA 618
EM GGL K Q KE+++L + ++ + +P I+ G G+GKT +A
Sbjct: 145 EMVGGLEK----QIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVA 200
Query: 619 YH 624
+H
Sbjct: 201 HH 202
>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 561 YIRLPFDGLVWFNPGIYKL 505
Y+R+P +GL + N G+YKL
Sbjct: 338 YLRIPKEGLYYRNFGLYKL 356
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 559 VIMFVGLQGSGKTTTCTK-LAYHYLRKNWKSCLVCADTFRAGAYDPVKQ 702
+I+FVG GSGKTT + + Y L + + C R A K+
Sbjct: 93 IIVFVGETGSGKTTQIPQFVLYDELPHLTNTQIACTQPRRVAAMSVAKR 141
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 6.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +3
Query: 531 IPARQREA*CNNVCGITRIWKDHNM 605
I R++ C N+C +++++ DH M
Sbjct: 256 IDGRKQRTWCRNICLLSKLFLDHKM 280
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 565 MFVGLQGSGKTTTCTKLAYHYLRKNWKSCL 654
+ +G+ G+GKTTT + L L K K L
Sbjct: 952 LILGMPGTGKTTTISSLIRSLLAKKKKILL 981
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 556 NVIMFVGLQGSGKTTTCTKLA 618
NVI +G G+GK T C +LA
Sbjct: 3 NVIFVLGGPGAGKGTQCDRLA 23
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 526 KPYQPVKGKPNV-IMFVGLQGSGKTTTCTKL 615
K +Q + GK + I+ VGL +GKTT KL
Sbjct: 7 KLFQSLFGKREMRILMVGLDAAGKTTILYKL 37
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 562 IMFVGLQGSGKTTTCTKLAYHYLRKNWKS 648
+ FVGL SGKT++ KL+ YL W S
Sbjct: 12 VCFVGLPASGKTSSAMKLS-RYL--TWMS 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,425
Number of Sequences: 5004
Number of extensions: 57975
Number of successful extensions: 167
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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