Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12o13
(719 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X86373-1|CAA60132.1| 504|Homo sapiens SRP 54 protein. 262 7e-70
U51920-1|AAC50994.1| 504|Homo sapiens signal recognition partic... 262 7e-70
BC003389-1|AAH03389.1| 504|Homo sapiens signal recognition part... 262 7e-70
BC000652-1|AAH00652.1| 504|Homo sapiens signal recognition part... 262 7e-70
X06272-1|CAA29608.1| 638|Homo sapiens protein ( Human mRNA for ... 48 3e-05
BC013583-1|AAH13583.1| 638|Homo sapiens signal recognition part... 48 3e-05
BC009110-1|AAH09110.1| 638|Homo sapiens signal recognition part... 48 3e-05
BC001162-1|AAH01162.1| 638|Homo sapiens signal recognition part... 48 3e-05
CR457025-1|CAG33306.1| 638|Homo sapiens SRPR protein. 48 4e-05
BC022031-1|AAH22031.1| 421|Homo sapiens chromosome 6 open readi... 33 1.0
AL133472-2|CAI19668.1| 421|Homo sapiens RP1-70A9.1 protein. 33 1.0
AL133472-1|CAI19667.1| 751|Homo sapiens RP1-70A9.1 protein. 33 1.0
AL121788-2|CAI22499.1| 421|Homo sapiens RP1-70A9.1 protein. 33 1.0
AL121788-1|CAI22498.1| 751|Homo sapiens RP1-70A9.1 protein. 33 1.0
AK055538-1|BAB70945.1| 421|Homo sapiens protein ( Homo sapiens ... 33 1.0
BC001116-1|AAH01116.1| 194|Homo sapiens adenylate kinase 1 prot... 30 9.6
>X86373-1|CAA60132.1| 504|Homo sapiens SRP 54 protein.
Length = 504
Score = 262 bits (643), Expect = 7e-70
Identities = 123/155 (79%), Positives = 140/155 (90%)
Frame = +1
Query: 253 MVLADLGRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVI 432
MVLADLGRKIT+AL+SLS ATIINEEVLN+MLK++C ALLEADVNI+LVK LRENV++ I
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 433 DFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVKGKPNVIMFVGLQGSGKTTTCTK 612
D +EMA GLNKR+MIQ AVFKELVKLVDPGVK + P KGK NVIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 613 LAYHYLRKNWKSCLVCADTFRAGAYDPVKQNCTKA 717
LAY+Y RK WK+CL+CADTFRAGA+D +KQN TKA
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKA 155
>U51920-1|AAC50994.1| 504|Homo sapiens signal recognition particle
protein.
Length = 504
Score = 262 bits (643), Expect = 7e-70
Identities = 123/155 (79%), Positives = 140/155 (90%)
Frame = +1
Query: 253 MVLADLGRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVI 432
MVLADLGRKIT+AL+SLS ATIINEEVLN+MLK++C ALLEADVNI+LVK LRENV++ I
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 433 DFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVKGKPNVIMFVGLQGSGKTTTCTK 612
D +EMA GLNKR+MIQ AVFKELVKLVDPGVK + P KGK NVIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 613 LAYHYLRKNWKSCLVCADTFRAGAYDPVKQNCTKA 717
LAY+Y RK WK+CL+CADTFRAGA+D +KQN TKA
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKA 155
>BC003389-1|AAH03389.1| 504|Homo sapiens signal recognition
particle 54kDa protein.
Length = 504
Score = 262 bits (643), Expect = 7e-70
Identities = 123/155 (79%), Positives = 140/155 (90%)
Frame = +1
Query: 253 MVLADLGRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVI 432
MVLADLGRKIT+AL+SLS ATIINEEVLN+MLK++C ALLEADVNI+LVK LRENV++ I
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 433 DFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVKGKPNVIMFVGLQGSGKTTTCTK 612
D +EMA GLNKR+MIQ AVFKELVKLVDPGVK + P KGK NVIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 613 LAYHYLRKNWKSCLVCADTFRAGAYDPVKQNCTKA 717
LAY+Y RK WK+CL+CADTFRAGA+D +KQN TKA
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKA 155
>BC000652-1|AAH00652.1| 504|Homo sapiens signal recognition
particle 54kDa protein.
Length = 504
Score = 262 bits (643), Expect = 7e-70
Identities = 123/155 (79%), Positives = 140/155 (90%)
Frame = +1
Query: 253 MVLADLGRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVI 432
MVLADLGRKIT+AL+SLS ATIINEEVLN+MLK++C ALLEADVNI+LVK LRENV++ I
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 433 DFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVKGKPNVIMFVGLQGSGKTTTCTK 612
D +EMA GLNKR+MIQ AVFKELVKLVDPGVK + P KGK NVIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 613 LAYHYLRKNWKSCLVCADTFRAGAYDPVKQNCTKA 717
LAY+Y RK WK+CL+CADTFRAGA+D +KQN TKA
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKA 155
>X06272-1|CAA29608.1| 638|Homo sapiens protein ( Human mRNA for
docking protein (signal recognition particle receptor).
).
Length = 638
Score = 48.4 bits (110), Expect = 3e-05
Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 7/142 (4%)
Frame = +1
Query: 295 QSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRM 474
+SLSR + E VL+ M + A + AD+ ++L +++ + + M
Sbjct: 331 KSLSREDM--ESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKV----MGTFSTVTST 384
Query: 475 IQSAVFKELVKLVDPG--VKPYQPV-----KGKPNVIMFVGLQGSGKTTTCTKLAYHYLR 633
++ A+ + LV+++ P V + + + +P V+ F G+ G GK+T K+++ L
Sbjct: 385 VKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLE 444
Query: 634 KNWKSCLVCADTFRAGAYDPVK 699
+ + DTFRAGA + ++
Sbjct: 445 NGFSVLIAACDTFRAGAVEQLR 466
>BC013583-1|AAH13583.1| 638|Homo sapiens signal recognition
particle receptor ('docking protein') protein.
Length = 638
Score = 48.4 bits (110), Expect = 3e-05
Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 7/142 (4%)
Frame = +1
Query: 295 QSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRM 474
+SLSR + E VL+ M + A + AD+ ++L +++ + + M
Sbjct: 331 KSLSREDM--ESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKV----MGTFSTVTST 384
Query: 475 IQSAVFKELVKLVDPG--VKPYQPV-----KGKPNVIMFVGLQGSGKTTTCTKLAYHYLR 633
++ A+ + LV+++ P V + + + +P V+ F G+ G GK+T K+++ L
Sbjct: 385 VKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLE 444
Query: 634 KNWKSCLVCADTFRAGAYDPVK 699
+ + DTFRAGA + ++
Sbjct: 445 NGFSVLIAACDTFRAGAVEQLR 466
>BC009110-1|AAH09110.1| 638|Homo sapiens signal recognition
particle receptor ('docking protein') protein.
Length = 638
Score = 48.4 bits (110), Expect = 3e-05
Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 7/142 (4%)
Frame = +1
Query: 295 QSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRM 474
+SLSR + E VL+ M + A + AD+ ++L +++ + + M
Sbjct: 331 KSLSREDM--ESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKV----MGTFSTVTST 384
Query: 475 IQSAVFKELVKLVDPG--VKPYQPV-----KGKPNVIMFVGLQGSGKTTTCTKLAYHYLR 633
++ A+ + LV+++ P V + + + +P V+ F G+ G GK+T K+++ L
Sbjct: 385 VKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLE 444
Query: 634 KNWKSCLVCADTFRAGAYDPVK 699
+ + DTFRAGA + ++
Sbjct: 445 NGFSVLIAACDTFRAGAVEQLR 466
>BC001162-1|AAH01162.1| 638|Homo sapiens signal recognition
particle receptor ('docking protein') protein.
Length = 638
Score = 48.4 bits (110), Expect = 3e-05
Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 7/142 (4%)
Frame = +1
Query: 295 QSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRM 474
+SLSR + E VL+ M + A + AD+ ++L +++ + + M
Sbjct: 331 KSLSREDM--ESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKV----MGTFSTVTST 384
Query: 475 IQSAVFKELVKLVDPG--VKPYQPV-----KGKPNVIMFVGLQGSGKTTTCTKLAYHYLR 633
++ A+ + LV+++ P V + + + +P V+ F G+ G GK+T K+++ L
Sbjct: 385 VKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLE 444
Query: 634 KNWKSCLVCADTFRAGAYDPVK 699
+ + DTFRAGA + ++
Sbjct: 445 NGFSVLIAACDTFRAGAVEQLR 466
>CR457025-1|CAG33306.1| 638|Homo sapiens SRPR protein.
Length = 638
Score = 47.6 bits (108), Expect = 4e-05
Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 7/142 (4%)
Frame = +1
Query: 295 QSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRM 474
+SLSR + E VL+ M + A + AD+ ++L +++ + + M
Sbjct: 331 KSLSREDM--ESVLDKMRDHLIAKNVAADIAVQLWESVANKLEGKV----MGTFSTVTST 384
Query: 475 IQSAVFKELVKLVDPG--VKPYQPV-----KGKPNVIMFVGLQGSGKTTTCTKLAYHYLR 633
++ A+ + LV+++ P V + + + +P V+ F G+ G GK+T K+++ L
Sbjct: 385 VKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLE 444
Query: 634 KNWKSCLVCADTFRAGAYDPVK 699
+ + DTFRAGA + ++
Sbjct: 445 NGFSVLIAACDTFRAGAVEQLR 466
>BC022031-1|AAH22031.1| 421|Homo sapiens chromosome 6 open reading
frame 199 protein.
Length = 421
Score = 33.1 bits (72), Expect = 1.0
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 526 KPY--QPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRK 636
+PY P+ G P + +G Q SGKTT C LA +Y K
Sbjct: 380 RPYLLPPMPGPPCKVFILGPQYSGKTTLCNMLAENYKGK 418
>AL133472-2|CAI19668.1| 421|Homo sapiens RP1-70A9.1 protein.
Length = 421
Score = 33.1 bits (72), Expect = 1.0
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 526 KPY--QPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRK 636
+PY P+ G P + +G Q SGKTT C LA +Y K
Sbjct: 380 RPYLLPPMPGPPCKVFILGPQYSGKTTLCNMLAENYKGK 418
>AL133472-1|CAI19667.1| 751|Homo sapiens RP1-70A9.1 protein.
Length = 751
Score = 33.1 bits (72), Expect = 1.0
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 526 KPY--QPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRK 636
+PY P+ G P + +G Q SGKTT C LA +Y K
Sbjct: 380 RPYLLPPMPGPPCKVFILGPQYSGKTTLCNMLAENYKGK 418
>AL121788-2|CAI22499.1| 421|Homo sapiens RP1-70A9.1 protein.
Length = 421
Score = 33.1 bits (72), Expect = 1.0
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 526 KPY--QPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRK 636
+PY P+ G P + +G Q SGKTT C LA +Y K
Sbjct: 380 RPYLLPPMPGPPCKVFILGPQYSGKTTLCNMLAENYKGK 418
>AL121788-1|CAI22498.1| 751|Homo sapiens RP1-70A9.1 protein.
Length = 751
Score = 33.1 bits (72), Expect = 1.0
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 526 KPY--QPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRK 636
+PY P+ G P + +G Q SGKTT C LA +Y K
Sbjct: 380 RPYLLPPMPGPPCKVFILGPQYSGKTTLCNMLAENYKGK 418
>AK055538-1|BAB70945.1| 421|Homo sapiens protein ( Homo sapiens
cDNA FLJ30976 fis, clone HHDPC2000055, weakly similar to
ADENYLATE KINASE, CHLOROPLAST (EC 2.7.4.3). ).
Length = 421
Score = 33.1 bits (72), Expect = 1.0
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 526 KPY--QPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRK 636
+PY P+ G P + +G Q SGKTT C LA +Y K
Sbjct: 380 RPYLLPPMPGPPCKVFILGPQYSGKTTLCNMLAENYKGK 418
>BC001116-1|AAH01116.1| 194|Homo sapiens adenylate kinase 1
protein.
Length = 194
Score = 29.9 bits (64), Expect = 9.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 550 KPNVIMFVGLQGSGKTTTCTKLAYHY 627
K N+I VG GSGK T C K+ Y
Sbjct: 7 KTNIIFVVGGPGSGKGTQCEKIVQKY 32
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,447,584
Number of Sequences: 237096
Number of extensions: 1915485
Number of successful extensions: 3075
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3075
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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