Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12o13
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68161-12|CAA92301.1|  496|Caenorhabditis elegans Hypothetical p...   229   1e-60
Z54271-9|CAA91040.1|  496|Caenorhabditis elegans Hypothetical pr...   229   1e-60
AC199169-1|ABO33259.1|  450|Caenorhabditis elegans Hypothetical ...    32   0.36 
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi...    28   7.7  
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi...    28   7.7  

>Z68161-12|CAA92301.1|  496|Caenorhabditis elegans Hypothetical
           protein F21D5.7 protein.
          Length = 496

 Score =  229 bits (561), Expect = 1e-60
 Identities = 103/155 (66%), Positives = 128/155 (82%)
 Frame = +1

Query: 253 MVLADLGRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVI 432
           MVLADLGRKI  A+  L ++T+INE  L+ MLK++C AL+E+DV+IRLVK L++NV+  I
Sbjct: 1   MVLADLGRKIRNAIGKLGQSTVINEGELDLMLKEVCTALIESDVHIRLVKQLKDNVKKAI 60

Query: 433 DFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVKGKPNVIMFVGLQGSGKTTTCTK 612
           +F+E+ GG NKRR IQ  VF EL+KLVDPGV P+ P KG+ NV MFVGLQGSGKTTTCTK
Sbjct: 61  NFEEIVGGANKRRYIQKTVFNELLKLVDPGVTPFTPTKGRRNVFMFVGLQGSGKTTTCTK 120

Query: 613 LAYHYLRKNWKSCLVCADTFRAGAYDPVKQNCTKA 717
           +AY+Y RK WK+CL+CADTFRAGA+D +KQN TKA
Sbjct: 121 MAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKA 155


>Z54271-9|CAA91040.1|  496|Caenorhabditis elegans Hypothetical
           protein F21D5.7 protein.
          Length = 496

 Score =  229 bits (561), Expect = 1e-60
 Identities = 103/155 (66%), Positives = 128/155 (82%)
 Frame = +1

Query: 253 MVLADLGRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVI 432
           MVLADLGRKI  A+  L ++T+INE  L+ MLK++C AL+E+DV+IRLVK L++NV+  I
Sbjct: 1   MVLADLGRKIRNAIGKLGQSTVINEGELDLMLKEVCTALIESDVHIRLVKQLKDNVKKAI 60

Query: 433 DFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVKGKPNVIMFVGLQGSGKTTTCTK 612
           +F+E+ GG NKRR IQ  VF EL+KLVDPGV P+ P KG+ NV MFVGLQGSGKTTTCTK
Sbjct: 61  NFEEIVGGANKRRYIQKTVFNELLKLVDPGVTPFTPTKGRRNVFMFVGLQGSGKTTTCTK 120

Query: 613 LAYHYLRKNWKSCLVCADTFRAGAYDPVKQNCTKA 717
           +AY+Y RK WK+CL+CADTFRAGA+D +KQN TKA
Sbjct: 121 MAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKA 155


>AC199169-1|ABO33259.1|  450|Caenorhabditis elegans Hypothetical
           protein F38A1.8 protein.
          Length = 450

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 27/120 (22%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
 Frame = +1

Query: 319 INEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQSAVFKE 498
           ++ E LN +++++   L+  +V     + + ++V + ++   +       + +++AV + 
Sbjct: 327 LSAEDLNPLIEKMRENLILKNVASEPAEKICQSVVSKLEGKVVNNFSRVAQEVKTAVRES 386

Query: 499 LVKLVDPG-----VKPYQPVK--GKPNVIMFVGLQGSGKTTTCTKLAYHYLRKNWKSCLV 657
           LV+L+ P      ++     K  G+P VI+F G+ G GK+T   K+ + +L +N    L+
Sbjct: 387 LVQLLTPKHRVDILRDVIEAKRDGRPYVIVFCGVNGVGKSTNLAKITF-WLTENKHRVLI 445


>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical
           protein T20G5.1 protein.
          Length = 1681

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 325 EEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQ 480
           ++V  + L  +  ALL+ D +   +K L  N R   D DE+   + KR  ++
Sbjct: 807 QKVNAARLPIVVGALLDVDCSEDAIKQLIINTRGKFDIDELVEEVEKRNRLK 858


>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
           nonsense-mediated mRNA decay trans-acting factor
           protein.
          Length = 1069

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 574 GLQGSGKTTTCTKLAYHYLRKNWKSCLVCA 663
           G  G+GKT     + YH ++K   + LVC+
Sbjct: 467 GPPGTGKTVVSATIVYHLVQKTEGNVLVCS 496


>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 2 protein.
          Length = 1069

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 574 GLQGSGKTTTCTKLAYHYLRKNWKSCLVCA 663
           G  G+GKT     + YH ++K   + LVC+
Sbjct: 467 GPPGTGKTVVSATIVYHLVQKTEGNVLVCS 496


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,766,298
Number of Sequences: 27780
Number of extensions: 318865
Number of successful extensions: 701
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)