Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12o10
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc... 84 2e-17
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 31 0.13
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 31 0.17
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 30 0.39
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 30 0.39
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 29 0.52
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 29 0.68
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.90
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 29 0.90
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 29 0.90
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 28 1.2
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 28 1.6
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 2.1
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 2.1
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 2.1
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 2.1
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 2.1
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 2.1
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 2.1
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 2.1
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 2.1
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 2.1
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 2.1
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 27 2.8
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 27 2.8
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 27 3.6
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 27 3.6
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 27 3.6
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 26 4.8
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb... 26 6.4
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo... 26 6.4
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 8.4
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 25 8.4
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 25 8.4
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 25 8.4
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 8.4
>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
Sen34|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 83.8 bits (198), Expect = 2e-17
Identities = 61/212 (28%), Positives = 104/212 (49%), Gaps = 1/212 (0%)
Frame = +1
Query: 85 ILRTQHRICSAFVGSVPSFPRQNDFLGLPIALSSEETALLVEKRICELHEMPAEFCKYEP 264
+ R + I VG++P P+QN FLGLP+ LS EE L+EK I + +
Sbjct: 25 VFRKNYHILGTLVGTLPQLPQQNVFLGLPMELSKEEAFYLIEKGISYI---------VDD 75
Query: 265 TEKDKELMEEFLKKVLEQQASALKKRKIEQLSQKIDIIVAGKKKNLINKGMSDANIDKDA 444
T+ K+L+E K ++Q LKKR+ S D ++A KKK K + +
Sbjct: 76 TKVHKQLLENTTKDDVKQ---CLKKRQ----SLAYDQMIAAKKKENEKKIEIMKKLGRTL 128
Query: 445 MLEEEIKRIQDLDPDHTLVQLPQEMYRNIETSPVGLDVLRP-NILEGDGAVKYSIFKDLW 621
L+ + + D + + + R E S + D + ++ E +Y +FK L
Sbjct: 129 PLDP-LNYDEHDSFDLSWIPVDTVTTRIAEKSSMNDDFHKEEDVFENLDINRYLMFKSLV 187
Query: 622 EKGYYVTSGSKFGCDYLIYPGDPVQFHASHMV 717
+ G+Y+ G +FGC ++ YPGD +++H+ ++V
Sbjct: 188 DTGFYLNPGLRFGCQFVAYPGDALRYHSHYLV 219
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 31.5 bits (68), Expect = 0.13
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 622 EKGYYVTSGSKFGCDYLIYPGDPVQFHASHMV 717
++G+ V +G+KF D+L+Y PV HA +
Sbjct: 263 QQGWVVKNGTKFSVDFLLYKKGPVFSHAEFAI 294
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 31.1 bits (67), Expect = 0.17
Identities = 18/67 (26%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +1
Query: 280 ELMEEFLKKVLEQQASALKKRKIEQLSQKID--IIVAGKKKNLINKGMSDANIDKDAMLE 453
+ M+E ++ L+ Q+ + KIE+L +I + AG+ ++ + M+D N+D++ L+
Sbjct: 107 QTMQETARQ-LKSQSKNVSIEKIEKLQDEIQDYMDAAGELNEVLGQNMTDINVDEEE-LD 164
Query: 454 EEIKRIQ 474
E++ +Q
Sbjct: 165 AELEALQ 171
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 29.9 bits (64), Expect = 0.39
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 5/109 (4%)
Frame = -1
Query: 569 FGLNTSKPTGLVSIFLYISCGSCTKVWSGSKSCILFISSSNIASLSIFASDIPLFMRFFF 390
FG P S+ ++CG VWS CI I S SL AS +P +F
Sbjct: 58 FGSMGLCPAMAGSLIFSMNCGGGGMVWSWIIGCICLIPVS--ISLGELASSMPTSGGLYF 115
Query: 389 FPATMIS-----IFCDNCSILRFFNADACCSSTFFKNSSINSLSFSVGS 258
+ T+ S C C + +ST + SS+ +GS
Sbjct: 116 WIFTLASPSSRAFLCWVCGYVSVLGYATIYASTVYSASSMVQALAVIGS 164
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 29.9 bits (64), Expect = 0.39
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Frame = -1
Query: 542 GLVSIFLYISCGSCTKVWSGSKSCILFISSSNIASLSIFASDIPLFMRFFFFPAT---MI 372
G VS Y+ G SG K+C +F ++S+ + F P+ +
Sbjct: 107 GFVSCCKYVDDGHLL-TGSGDKTC-MFWDIEQAKAISVLKGHEMDIVSLDFLPSNPNLFV 164
Query: 371 SIFCDNCSILRFFNADACCSSTFFKNSSINSLSF 270
+ CD + L A CC++ S INS+SF
Sbjct: 165 TGGCDKLAKLWDLRAAYCCATFPGNTSDINSISF 198
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 29.5 bits (63), Expect = 0.52
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +1
Query: 304 KVLEQQASALKKRKIEQLSQKIDIIVAGKKKNLINKGMSDANIDKDAMLEEEIKRIQDLD 483
+V ++ S K+ K+ +L +K+D KKKN + G S++ D+M + + K+ L+
Sbjct: 11 EVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSES----DSMSQNDKKKDSSLN 66
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 29.1 bits (62), Expect = 0.68
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 451 EEEIKRIQDLDPDHTLVQLPQEMYRNIETSP-VGLDVLRPNILE 579
EEE+ I DL H L+ + E+Y + P V L LRP + +
Sbjct: 196 EEELNEIADLVLKHNLLVVSDEVYDRLSFVPFVRLATLRPELFK 239
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 28.7 bits (61), Expect = 0.90
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 259 EPTEKDKELMEEFLKKVLEQQASALKKRK--IEQLSQKIDIIVAGKKKNLINKGMSDANI 432
E EKD ++ EF+++ +EQ S+L+K IE ++ + A +L D +
Sbjct: 255 EKAEKDADIYSEFIQQYMEQLESSLEKSSTAIENAQNRLAEMTA----HLAESSDYDNDD 310
Query: 433 DKDAMLEE 456
D D ++ E
Sbjct: 311 DTDGIINE 318
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 28.7 bits (61), Expect = 0.90
Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Frame = +1
Query: 268 EKDKELMEEFLKKVLEQQAS-ALKKRKIEQLSQKIDIIVAGKKKNLINKGMSDANIDKDA 444
E KE L+ + + QA+ AL+ + IE + ++ I++ +L+N+GM +I+K
Sbjct: 369 ESAKEDQARKLQSLQDAQATCALRAQAIEMNPELVEAIIS-YINSLLNQGMDWLDIEK-- 425
Query: 445 MLEEEIKRIQDLDPDHTLVQLPQEMYRNIET 537
+++ + +R P +Q+P ++ +N T
Sbjct: 426 LIQSQKRR----SPVAAAIQIPLKLIKNAVT 452
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 28.7 bits (61), Expect = 0.90
Identities = 12/46 (26%), Positives = 30/46 (65%)
Frame = +1
Query: 271 KDKELMEEFLKKVLEQQASALKKRKIEQLSQKIDIIVAGKKKNLIN 408
+D L + +++ VL+++ ALK +++ + + + V+GKK +L++
Sbjct: 553 EDDRLKQLYIEGVLDKEIKALKVSQLKDILRDRGLRVSGKKADLLD 598
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 28.3 bits (60), Expect = 1.2
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Frame = +1
Query: 208 EKRICELHEMPAEFCKYEPTEKDKELMEE------FLKKVLEQQASALKKRKIEQLSQKI 369
EKR+ E+ E E + + EK+++ EE +L K ++Q AL +R+++Q+ +
Sbjct: 278 EKRLAEVEEARKEEARLKKKEKERKKKEEMKAQGKYLSKKQKEQ-QALAQRRLQQMLES- 335
Query: 370 DIIVAG 387
+ VAG
Sbjct: 336 GVRVAG 341
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Frame = +1
Query: 388 KKKNLINKGMSDA-NIDKDA--MLEEEIKRIQDLDPDHTLVQLPQEMYRNIET 537
+KKNL K + A N+D A +++E I+ + D+ P+ L+ E+YRN+ET
Sbjct: 615 RKKNLALKHFTIAWNLDGKATHIIKESIENL-DI-PEENLLTETGEIYRNLET 665
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 199 LLVEKRICELHEMPAEFCKYEPTEKDKELMEEFLKKVLE 315
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 199 LLVEKRICELHEMPAEFCKYEPTEKDKELMEEFLKKVLE 315
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 199 LLVEKRICELHEMPAEFCKYEPTEKDKELMEEFLKKVLE 315
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 199 LLVEKRICELHEMPAEFCKYEPTEKDKELMEEFLKKVLE 315
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 199 LLVEKRICELHEMPAEFCKYEPTEKDKELMEEFLKKVLE 315
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 199 LLVEKRICELHEMPAEFCKYEPTEKDKELMEEFLKKVLE 315
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 199 LLVEKRICELHEMPAEFCKYEPTEKDKELMEEFLKKVLE 315
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 199 LLVEKRICELHEMPAEFCKYEPTEKDKELMEEFLKKVLE 315
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 199 LLVEKRICELHEMPAEFCKYEPTEKDKELMEEFLKKVLE 315
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 199 LLVEKRICELHEMPAEFCKYEPTEKDKELMEEFLKKVLE 315
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 199 LLVEKRICELHEMPAEFCKYEPTEKDKELMEEFLKKVLE 315
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 191 SSEDNAIGSPKKSFCLGNEGTEP 123
SS D+ SPKK +GN+G +P
Sbjct: 330 SSSDSEFSSPKKKKKVGNQGKKP 352
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 271 FLLVHIYKIQLAFHEVHISSFQPIML 194
++ +H Y ++L +HIS +P+ML
Sbjct: 407 YICLHAYLLELTISVIHISDKKPLML 432
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 133 PSFPRQNDFLGLPIALSSEETALLVEKRICELHE 234
P P ++D G P+ S++ A + KR+ HE
Sbjct: 148 PKVPMKDDVTGEPLIQRSDDNADALRKRLVTYHE 181
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 506 SCTKVWSGSKSCILFISSSNIASLSIFASDIPLFMRF 396
S K+W+ C+LF + ++ S++ A +P M F
Sbjct: 108 SLIKLWNEIHDCVLFDAIEHVRSIATIAFHLPTEMVF 144
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 286 MEEFLKKVLEQQASALKKRKIEQLSQKIDIIVAGKKKNLINKGMSDANIDKDAMLEEEIK 465
+E LKKV E+++SAL K + +L I + K + D D DA L E +
Sbjct: 259 VERLLKKVAEKKSSALLKERPPKLPAASFIQTYLDSFHAQPKPLFDNKFDGDAALAEAYE 318
Query: 466 RIQ 474
++
Sbjct: 319 YLE 321
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 26.2 bits (55), Expect = 4.8
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = -1
Query: 380 TMISIFCD-NCSILRFFNADACCSSTFFKNSSINSLSFSVGSYLQNSAGIS*SSHILFST 204
T +S CD NCS+ F N S + + I F G +NSA SS F T
Sbjct: 297 TGLSSTCDVNCSLQNFANYQDFYFSKGYNSYQIEIQMFGNGEATENSA-FGLSSLQFFET 355
Query: 203 NNAVSSEDN 177
N +D+
Sbjct: 356 NQNSYFDDS 364
>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 376
Score = 25.8 bits (54), Expect = 6.4
Identities = 20/78 (25%), Positives = 38/78 (48%)
Frame = +1
Query: 94 TQHRICSAFVGSVPSFPRQNDFLGLPIALSSEETALLVEKRICELHEMPAEFCKYEPTEK 273
T+ R+C + GS + NDF + + ++E +RI ++E C YE E
Sbjct: 10 TETRLCPSNQGSAKKYRPWNDFRSDTLTVPTDEM-----RRI--MYEASDGDCVYEEDE- 61
Query: 274 DKELMEEFLKKVLEQQAS 327
D +E ++ K+ ++A+
Sbjct: 62 DTRKLEVYVAKLTGKEAA 79
>SPMIT.08 |||mitochondrial ribosomal small
subunit|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 227
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 46 KGIGYLWNSEHWYILRTQHRICSAFVGSVPSFPRQNDFLGLPIALSSEETALLVEKRI 219
KGI N W L ++ RI + GSVP N + +A+ S+ + ++ R+
Sbjct: 164 KGIHISLNLIKWNSLSSRGRITNIIKGSVPLTNNSNGYDESSLAIYSKMGTIQIKVRL 221
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +1
Query: 265 TEKDKELMEEFLKKV---LEQQASALKKRKIEQLSQKIDII 378
T+K+ E+ KK+ + +Q SA K+ KIE L D+I
Sbjct: 42 TDKNASNQEQGTKKLESSVGEQESATKRAKIENLKDNQDLI 82
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +1
Query: 298 LKKVLEQQASALK--KRKIEQLSQKIDI-IVAGKKKNLINKGMSDANIDKDAMLEEEIKR 468
L+K++E + S ++ +++ E+L +D I K ++ +NK K+ +E+EIK+
Sbjct: 54 LQKMIECEPSCVEYFRQRKEELESHVDSEIETSKDESSVNKVEEKVEEFKEDNVEQEIKQ 113
Query: 469 IQDL 480
+ L
Sbjct: 114 KRSL 117
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/67 (25%), Positives = 35/67 (52%)
Frame = +1
Query: 289 EEFLKKVLEQQASALKKRKIEQLSQKIDIIVAGKKKNLINKGMSDANIDKDAMLEEEIKR 468
+EF ++ EQ+A L+++++E++S+ I + + N + D A EE+
Sbjct: 137 DEFDARMEEQEALRLQRKRLEKVSETDAIDDISQWAD--NSDLKSIKQDSSAAAIEEL-- 192
Query: 469 IQDLDPD 489
+Q + PD
Sbjct: 193 VQQISPD 199
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 115 AFVGSVPSFPRQNDFLGLPIALSSEETALLVEKRICELH 231
A +G V S P + F +PI S++ET L+VE +C L+
Sbjct: 194 AKLGKVRS-PLEGRFNLVPI--SADETWLIVESEVCSLY 229
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 140 FQGKMISWGFRLHYLLKKQHYWLKRGYVNFMKCQLNFVN 256
F K+ FR Y + Q LKRGYV K + +N
Sbjct: 700 FPNKLFYTEFRARYGILSQS--LKRGYVEAKKATITIIN 736
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,109,611
Number of Sequences: 5004
Number of extensions: 69259
Number of successful extensions: 311
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -