Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12o10
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    26   0.42 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   1.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.0  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = +1

Query: 271 KDKELMEEFLKKVLEQQASALKKRKIEQLSQKIDIIVAG 387
           KD+++M+   +K++E++    +K K + L+  ++IIV G
Sbjct: 451 KDRKIMDMVREKIIEEK----RKNKNKNLTPAVNIIVKG 485


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 525 KYRNQSSRFGCIKTKYFGRR 584
           KYRN   +  C KT+  GRR
Sbjct: 334 KYRNAFKQTICCKTRIIGRR 353


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 151 NDFLGLPIALSSEETALLVEKRICELHEMP 240
           ++F   P+    E+T  +   + CELH  P
Sbjct: 366 SNFAMKPLVRQPEDTMSVDRMQHCELHMQP 395


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 151 NDFLGLPIALSSEETALLVEKRICELHEMP 240
           ++F   P+    E+T  +   + CELH  P
Sbjct: 366 SNFAMKPLVRQPEDTMSVDRMQHCELHMQP 395


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 572 IFGLNTSKPTGLVSIFLYIS 513
           + G  T++  G  +IFLYIS
Sbjct: 235 VSGFITTEVAGTYAIFLYIS 254


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 349 EQLSQKIDIIVAGKKKNLINKGMSDANIDK 438
           ++ S +   + AG+  NL+    S A ++K
Sbjct: 5   QETSNEDSYLSAGRPSNLLRTSFSSAKLEK 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,764
Number of Sequences: 438
Number of extensions: 4900
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)