Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12o08
         (709 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069831-1|AAL39976.1|  485|Drosophila melanogaster SD07771p pro...    30   3.5  
AL138972-12|CAB72295.1|  721|Drosophila melanogaster EG:BACR7C10...    30   3.5  
AE014298-419|ABC67171.1|  485|Drosophila melanogaster CG9900-PC,...    30   3.5  
AE014298-418|AAF45794.1|  721|Drosophila melanogaster CG9900-PB,...    30   3.5  
X64390-1|CAB76122.1|  721|Drosophila melanogaster zw10 protein p...    29   4.7  
AY395750-1|AAR89513.1| 1199|Drosophila melanogaster ATM protein ...    29   4.7  
AE014297-1966|ABI31168.1| 2767|Drosophila melanogaster CG6535-PB...    29   4.7  

>AY069831-1|AAL39976.1|  485|Drosophila melanogaster SD07771p
           protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +3

Query: 420 KCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNL-SSLESYETLKIKLALSKYM 596
           K  K   V  + V  +   +  D+ +    ++A  +++ +  +LE YET+K+K  +  YM
Sbjct: 134 KATKDYLVLLDLVGRLRAFIYGDDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYM 193

Query: 597 AMLSTLEMTQPLLEI 641
              S  E    L+++
Sbjct: 194 LQQSLQERFDRLVQL 208


>AL138972-12|CAB72295.1|  721|Drosophila melanogaster
           EG:BACR7C10.3,FBgn0004643;mit(1)15 protein.
          Length = 721

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +3

Query: 420 KCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNL-SSLESYETLKIKLALSKYM 596
           K  K   V  + V  +   +  D+ +    ++A  +++ +  +LE YET+K+K  +  YM
Sbjct: 134 KATKDYLVLLDLVGRLRAFIYGDDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYM 193

Query: 597 AMLSTLEMTQPLLEI 641
              S  E    L+++
Sbjct: 194 LQQSLQERFDRLVQL 208


>AE014298-419|ABC67171.1|  485|Drosophila melanogaster CG9900-PC,
           isoform C protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +3

Query: 420 KCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNL-SSLESYETLKIKLALSKYM 596
           K  K   V  + V  +   +  D+ +    ++A  +++ +  +LE YET+K+K  +  YM
Sbjct: 134 KATKDYLVLLDLVGRLRAFIYGDDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYM 193

Query: 597 AMLSTLEMTQPLLEI 641
              S  E    L+++
Sbjct: 194 LQQSLQERFDRLVQL 208


>AE014298-418|AAF45794.1|  721|Drosophila melanogaster CG9900-PB,
           isoform B protein.
          Length = 721

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +3

Query: 420 KCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNL-SSLESYETLKIKLALSKYM 596
           K  K   V  + V  +   +  D+ +    ++A  +++ +  +LE YET+K+K  +  YM
Sbjct: 134 KATKDYLVLLDLVGRLRAFIYGDDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYM 193

Query: 597 AMLSTLEMTQPLLEI 641
              S  E    L+++
Sbjct: 194 LQQSLQERFDRLVQL 208


>X64390-1|CAB76122.1|  721|Drosophila melanogaster zw10 protein
           protein.
          Length = 721

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +3

Query: 420 KCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNL-SSLESYETLKIKLALSKYM 596
           K  K   V  + V  +   +  D+ +    ++A  +++ +  +LE YET+K+K  +  YM
Sbjct: 134 KATKDYLVLLDLVGRLRAFIYGDDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYM 193

Query: 597 AMLSTLEMTQPLLEI 641
              S  E    L+++
Sbjct: 194 LQQSLQERFARLVQL 208


>AY395750-1|AAR89513.1| 1199|Drosophila melanogaster ATM protein
           protein.
          Length = 1199

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +3

Query: 387 YEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTY--ELAEFDLKNLSSLESYE 560
           Y H+ +   +   I+  R    KV   T+  N D ++        A  D + L+ +E   
Sbjct: 588 YRHSQEYQTLKDIIEQNRQTAEKV---TQRENQDRRVISVQMKRYASLDEQQLNQIEEKL 644

Query: 561 TLKIKLALSKYMA 599
           T  ++LAL+ YMA
Sbjct: 645 TEYLRLALTNYMA 657


>AE014297-1966|ABI31168.1| 2767|Drosophila melanogaster CG6535-PB
            protein.
          Length = 2767

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +3

Query: 387  YEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTY--ELAEFDLKNLSSLESYE 560
            Y H+ +   +   I+  R    KV   T+  N D ++        A  D + L+ +E   
Sbjct: 2156 YRHSQEYQTLKDIIEQNRQTAEKV---TQRENQDRRVISVQMKRYASLDEQQLNQIEEKL 2212

Query: 561  TLKIKLALSKYMA 599
            T  ++LAL+ YMA
Sbjct: 2213 TEYLRLALTNYMA 2225


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,358,987
Number of Sequences: 53049
Number of extensions: 476976
Number of successful extensions: 1002
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3128965752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)