Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12o08
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11100.1 68417.m01802 expressed protein                             33   0.19 
At5g02920.1 68418.m00235 F-box family protein low similarity to ...    29   3.0  
At4g31370.1 68417.m04448 fasciclin-like arabinogalactan family p...    29   4.0  
At5g61460.1 68418.m07712 structural maintenance of chromosomes (...    27   9.2  

>At4g11100.1 68417.m01802 expressed protein
          Length = 287

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
 Frame = +3

Query: 348 YESFKRYHAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFD 527
           YE+ K +H + +     S   ++++C+K +R K  KVR   E +    + ++T  + E  
Sbjct: 41  YEAIKLHHENKAKELEVSNKRLLEECMKERREKA-KVRKTFEEMKKTMESERTAIVDELK 99

Query: 528 LKNLSSL--ESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVFSTL 695
            KN   L  +  E  ++    +KY+ +    ++ +      ++  D   +A+V  S +
Sbjct: 100 SKNQELLLGKKKEEEELVKMENKYVELAEKFDVVEKECAYLKSLYDAEVVASVTQSAV 157


>At5g02920.1 68418.m00235 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 345

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = -1

Query: 601 IAMYLLSANLIFRVS*LSKLLRFFKSNSANS*VFWIFSSLFTISVTVRTLLHLTRFIFIH 422
           I  ++   NL+ R S LSK  R   S + +    W+  S   I+ T+ +    ++    H
Sbjct: 41  ILSFIPETNLVIRTSVLSKRWRHVWSKTPHLSFEWLMVSPKLINKTLASYT-ASKITSFH 99

Query: 421 LSTTFAFEA 395
           L T++++EA
Sbjct: 100 LCTSYSYEA 108


>At4g31370.1 68417.m04448 fasciclin-like arabinogalactan family
           protein similar to fasciclin-like
           arabinogalactan-protein 1 [Arabidopsis thaliana]
           gi|13377776|gb|AAK20857
          Length = 278

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
 Frame = +3

Query: 417 DKCIKMKRVKC-NKVRTVTEIVNSDEKIQKTYELAEFDLKNLSS----LESYETLKIKLA 581
           D  IK K +   +K +T+T +  S++ I      +E +L+N+      L+ Y+ LK++  
Sbjct: 42  DLFIKTKLIAAIDKYQTITVLAVSNDAISSITNRSEVELRNILMTHVILDYYDELKLQ-G 100

Query: 582 LSKYMAMLSTLEMTQPLLE 638
           + +   ML+TL  T  L E
Sbjct: 101 MREKSIMLTTLYQTTGLGE 119


>At5g61460.1 68418.m07712 structural maintenance of chromosomes
           (SMC) family protein very strong similarity to SMC-like
           protein (MIM) [Arabidopsis thaliana] GI:5880614;
           contains Pfam profile PF02463: RecF/RecN/SMC N terminal
           domain
          Length = 1057

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
 Frame = +3

Query: 390 EHASKANVVDKCIKMKR-VKCN------KVRTVTEIVNSDEKIQKTYELAEFDLKN--LS 542
           E + + N +++C++ KR  + N      KVR + +  +  EK+  T EL   DLKN   +
Sbjct: 646 EASKEQNEINQCMRRKREAEENLEELELKVRQLKKHRSQAEKVLTTKELEMHDLKNTVAA 705

Query: 543 SLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRN 650
            +E+  +  +     + M  L  ++  +  LE  +N
Sbjct: 706 EIEALPSSSVNELQREIMKDLEEIDEKEAFLEKLQN 741


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,869,265
Number of Sequences: 28952
Number of extensions: 227877
Number of successful extensions: 493
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)