Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12o06
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0507 + 3655570-3655573,3655648-3655832                           52   2e-07
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492...    34   0.069
02_02_0664 - 12747888-12747900,12748161-12748229,12748332-127483...    30   1.1  
09_03_0040 + 11816056-11819069,11819837-11820428                       29   1.5  
02_01_0033 + 202703-202705,203397-203458,203566-203665,203875-20...    27   6.0  
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741...    27   7.9  
02_04_0640 - 24664841-24664855,24664895-24664978,24665232-246653...    27   7.9  

>06_01_0507 + 3655570-3655573,3655648-3655832
          Length = 62

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 22/28 (78%), Positives = 26/28 (92%)
 Frame = +1

Query: 250 GKVHGSLARAGKVKGQTPKVEKQQKRRR 333
           GKVHGSLARAGKV+GQTPKV KQ K+++
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKK 29



 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = +3

Query: 339 GRAKRRIQYNRRFVNVVQTFGRRRGPNSN 425
           GRA +R+QYNRRFV  V  FG++RGPNS+
Sbjct: 32  GRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60


>04_04_0165 +
           23247265-23247472,23248115-23248407,23249182-23249239,
           23249302-23250014
          Length = 423

 Score = 33.9 bits (74), Expect = 0.069
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 57  RAIDTRPGRQWPGVHWSDQGTHSYSCCSW**RPYSIIMWS 176
           +A+  RP    PG+HW++Q    YS CS    P  I MW+
Sbjct: 368 KAMSMRPDAH-PGIHWNNQWMRGYSDCSHWCLPGPIDMWN 406


>02_02_0664 -
           12747888-12747900,12748161-12748229,12748332-12748395,
           12749540-12749558,12749777-12749843,12749934-12749953,
           12750079-12750248,12751646-12751823
          Length = 199

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 81  RQWPGVHWSDQGTHSY 128
           R WPG+HWSD  T  Y
Sbjct: 51  RIWPGLHWSDSSTPLY 66


>09_03_0040 + 11816056-11819069,11819837-11820428
          Length = 1201

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +1

Query: 241 LLGGKVHGSLARAGKV--KGQTPKVEKQ-QKRRRRLAVLSVEFSTTEDLSTLCRPSDVVA 411
           L+ G  H S A  GK     ++ KVE + Q+ +    V   +F   ++ ST   P+D +A
Sbjct: 352 LVCGLDHSSEAIDGKTIEDDESSKVENRIQEFQVATNVALDDFEGAKNGST--HPNDSIA 409

Query: 412 DPTPIHRFISK*NAK 456
            P+P H F+ + N K
Sbjct: 410 KPSPSHGFVERVNGK 424


>02_01_0033 +
           202703-202705,203397-203458,203566-203665,203875-203916,
           204264-204305,204437-204589,206559-207221
          Length = 354

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 310 PLWGFVL*LYLHEPKIRALYHQAMALSGLV 221
           P WG V  L L  P  + ++HQ++A  G +
Sbjct: 282 PSWGEVKDLQLQAPCYQGMFHQSVACPGFI 311


>05_07_0274 -
           28873531-28873644,28873727-28873981,28874111-28874179,
           28874277-28874415,28874511-28875076,28875225-28875326,
           28875425-28875491,28875576-28876072,28876148-28876212,
           28876470-28876567,28876652-28876694,28876870-28876963,
           28877325-28877360,28877454-28877542,28877667-28877788,
           28878193-28878404
          Length = 855

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 283 KVKGQTPKVEKQQKRRRRLAVLSVEFSTTEDLSTLCRPSDVV 408
           +++  T K++ Q  R   + VLS      +DLS++C+   +V
Sbjct: 342 QMEEDTKKIQIQDNRNHIIEVLSANDLDCDDLSSICQADTMV 383


>02_04_0640 -
           24664841-24664855,24664895-24664978,24665232-24665319,
           24665457-24667318
          Length = 682

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = -3

Query: 150 FITNCSKSTNAFLDLTNGLLAIDVQDV-----CRLPSDMQLHIVKS 28
           FI + S   +AF     GLL++ VQD+     C  PS +QLH +KS
Sbjct: 346 FIEDESVIQDAFAQCIGGLLSVVVQDMRLTVECVHPS-VQLHTIKS 390


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,953,414
Number of Sequences: 37544
Number of extensions: 180588
Number of successful extensions: 546
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)