Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12o01
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    29   0.16 
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    29   0.21 
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    27   1.1  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   2.0  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   2.6  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   2.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   2.6  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    24   7.9  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    24   7.9  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 316 VSRDIRTTTEARRPGTARNTRRPKPTELSV 227
           V+R +RT+T  RRP T    R+PK    SV
Sbjct: 21  VARKVRTSTTFRRPKTLELARKPKYARKSV 50


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.1 bits (62), Expect = 0.21
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 316 VSRDIRTTTEARRPGTARNTRRPKPTELSV 227
           V++ +RT+T  RRP T + +R+PK    SV
Sbjct: 21  VAKKVRTSTTFRRPKTLQLSRKPKYARKSV 50


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -2

Query: 351 PRRSTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS*AFAAGSAQR 205
           P  S     A+P    +G  + PGA+ Q  T   R  +    ++GSA +
Sbjct: 431 PHASASKLAAKPSVKPAGAYRPPGARGQNSTFSYRREEIDVMSSGSANK 479


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 289 EARRPGTARNTRRPKPTELSVCCRERSETPRHRN 188
           EA  PG  RNTR+    ++S+    ++ET   +N
Sbjct: 475 EADYPGVNRNTRQDDVQDISMETESQNETDESQN 508


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 302 QDHHRGPAPRHSEKHSASEADRAERLLPGALRD 204
           ++HH+GP  +H+E+   +     E L+  A  D
Sbjct: 416 KEHHQGPKEKHNERPEQNMQSSHELLVIEAFAD 448



 Score = 24.6 bits (51), Expect = 4.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 341 PPLRAVQSREQGHQDHHRGPAPRHSEK 261
           PP +  +  E    +HHRGP  +   K
Sbjct: 340 PPFKHHELEEHEGPEHHRGPEDKEHHK 366


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -1

Query: 265 RNTRRPKPTELSVCC--RERSETPRHRNKPSRPVWSRRSPHH 146
           RN +  K T  SV      R +  R  N P  P W+ R+ HH
Sbjct: 866 RNKKAAKLTADSVPFPFESREQYERSLNLPMGPEWTTRASHH 907


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
 Frame = -1

Query: 352  APPVH-PSGRCRAVSRDIRTT----TEARRPGTARNTRRPKPTELSVCCRERSETPRHRN 188
            APPV  PS    +VS    +     + A    T+ +     P   SV  R +S+  RH  
Sbjct: 1236 APPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSSSMASAAPARTSVS-RSKSKAERHET 1294

Query: 187  KPSRPVWSRRSPHHFH 140
              S    S+   HH H
Sbjct: 1295 STSSRKSSKSGEHHHH 1310


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 294 PQRPGAQAQRETLGVRSRQS*AFAAGSAQRRP 199
           P +P   +  +TLG  +R S A  AGS    P
Sbjct: 296 PYKPYLNSSHDTLGSSTRPSSADTAGSPATSP 327


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +2

Query: 155 TPSRPNRSRRFIPVTGRL*ALPAANAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAPPG 334
           TPS P  S   +P    + A+P        + T S       P + G P V A G+  PG
Sbjct: 430 TPSLPVPSIPAVPGMEAM-AMPPGVTSSIAVPTTSSMPLQGMPTMFGAPGVSAPGTEAPG 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,474,283
Number of Sequences: 5004
Number of extensions: 26373
Number of successful extensions: 96
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)