Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12o01
         (352 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   3.2  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   4.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   7.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   9.8  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = -1

Query: 328 RCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPS 179
           RC   ++ + + T  RR     +TR  K    ++C R  S     RN  S
Sbjct: 4   RCEPCNKILTSLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNHKS 53


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 13/50 (26%), Positives = 19/50 (38%)
 Frame = -1

Query: 334 SGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNK 185
           +GR      D+   T        +  ++P PTE  V CR   E   +  K
Sbjct: 7   NGRDFEYCPDLDNVTMPETTPRRKKNKKPLPTE-CVFCRNNGEEEAYYRK 55


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +1

Query: 133 YYNGNGVDSVETK 171
           Y NG+G++S++ +
Sbjct: 824 YVNGSGIESIQNR 836


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 12/51 (23%), Positives = 18/51 (35%)
 Frame = -1

Query: 346 PVHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRH 194
           P+HP     ++   I TTT      TA        T   +  +E  +   H
Sbjct: 93  PLHPPASSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQETLQRHHH 143


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -3

Query: 308 GHQDHHRGPAPRHSEKHSAS 249
           GH   H    P H   H+A+
Sbjct: 420 GHGHSHIHATPHHHHSHAAT 439


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 300 LMSLLTALHRPEGWTGG 350
           +++LL +LHR   ++GG
Sbjct: 23  MLALLVSLHRLSIYSGG 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,327
Number of Sequences: 438
Number of extensions: 2518
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)