Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12n19
         (138 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    41   2e-05
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    39   1e-04
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    28   0.15 
SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase |Sch...    25   1.4  

>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 41.1 bits (92), Expect = 2e-05
 Identities = 16/28 (57%), Positives = 24/28 (85%)
 Frame = +1

Query: 55  DIDVRNYVQVKKVPGGTIXDSCVXHGVV 138
           DIDVR+YV++KK+PGG+I D  + +GV+
Sbjct: 518 DIDVRSYVKIKKIPGGSIQDCFLVNGVL 545


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 38.7 bits (86), Expect = 1e-04
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +1

Query: 55  DIDVRNYVQVKKVPGGTIXDSCVXHGVV 138
           +ID++ Y +V+KVPGG I  SCV  GV+
Sbjct: 190 EIDIKRYARVEKVPGGEIESSCVLDGVM 217


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 28.3 bits (60), Expect = 0.15
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 70  NYVQVKKVPGGTIXDSCVXHGV 135
           N + +KKVPGG + DS +  GV
Sbjct: 198 NMIGIKKVPGGAMEDSLLVKGV 219


>SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 208

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 1   KRVSDPPSLRFGNYVHATDIDVRNYVQVKKVPG 99
           KR S P +++FG          R Y+QV+K PG
Sbjct: 94  KRKS-PLNIKFGKVAIGDSFYKRVYIQVEKTPG 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 499,205
Number of Sequences: 5004
Number of extensions: 5454
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 26
effective length of database: 2,232,374
effective search space used: 42415106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)