Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12n19
         (138 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118...    36   0.003
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832...    36   0.003
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995...    30   0.23 
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880...    26   4.8  
11_06_0606 + 25432471-25432517,25433098-25433173,25433272-254334...    25   8.5  
01_06_0517 + 29981537-29981927,29982024-29982231,29982373-299825...    25   8.5  

>06_03_0353 +
           19810945-19810975,19811308-19811369,19811741-19811813,
           19813292-19813359,19813496-19813565,19813908-19813976,
           19814065-19814136,19814247-19814320,19814420-19814697,
           19814804-19815188,19815268-19815393,19815583-19815687,
           19815986-19815994,19817040-19817114,19817202-19817390
          Length = 561

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +1

Query: 55  DIDVRNYVQVKKVPGGTIXDSCVXHGVV 138
           ++D++ Y++V+KVPGG + DS V  GV+
Sbjct: 193 EVDIKKYIKVEKVPGGQLEDSRVLKGVM 220


>02_02_0253 -
           8325437-8325628,8325705-8325779,8325933-8326037,
           8326249-8326374,8326451-8326835,8326931-8327208,
           8327294-8327367,8327476-8327547,8327637-8327705,
           8340132-8340201,8340806-8340873,8341571-8341643,
           8341807-8341868,8342168-8342198
          Length = 559

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +1

Query: 55  DIDVRNYVQVKKVPGGTIXDSCVXHGVV 138
           ++D++ Y++V+KVPGG + DS V  GV+
Sbjct: 193 EVDIKKYIKVEKVPGGQLEDSKVLKGVM 220


>06_03_1193 -
           28298656-28298754,28299303-28299377,28299456-28299544,
           28299679-28299760,28300385-28300474,28300557-28300655,
           28300733-28300852,28300968-28301084,28301174-28301309,
           28301415-28301584,28301744-28301947,28302032-28302157,
           28302841-28303101,28303215-28303229
          Length = 560

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 61  DVRNYVQVKKVPGGTIXDSCVXHGV 135
           D  N + +KKVPGGT+ DS + +GV
Sbjct: 193 DRLNLLGIKKVPGGTMRDSFLVNGV 217


>03_05_0339 +
           23287620-23287676,23287784-23287849,23287937-23288048,
           23288240-23288368,23288795-23288866,23289245-23289360,
           23289494-23289570,23289788-23290273,23290373-23290688,
           23290769-23290915
          Length = 525

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 76  VQVKKVPGGTIXDSCVXHGVV 138
           +Q+ K+PGG++ DS +  G +
Sbjct: 192 IQILKIPGGSLKDSFLDEGFI 212


>11_06_0606 +
           25432471-25432517,25433098-25433173,25433272-25433448,
           25433576-25433653,25433749-25433853,25434042-25434108,
           25434219-25434280,25434371-25434510,25434717-25434843,
           25434917-25435031,25435220-25435308,25435699-25435782,
           25435961-25436737
          Length = 647

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 10  SDPPSLRFGNYVHATDIDVRNYVQVK 87
           +DPPS R   +   T+ D+ +Y++VK
Sbjct: 175 TDPPSDRISVWSFNTETDLWSYIEVK 200


>01_06_0517 +
           29981537-29981927,29982024-29982231,29982373-29982544,
           29984468-29984533,29984658-29984771,29984880-29984996,
           29985097-29985223,29985317-29985603,29985701-29985891,
           29985981-29986063,29986175-29986251,29986729-29986896
          Length = 666

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 7   VSDPPSLRFGNYVHA-TDIDVRNYVQVKKVPG 99
           V+ P + + GN   + T  DV+ Y Q K +PG
Sbjct: 506 VARPATCKLGNIAGSETFRDVKQYPQAKSIPG 537


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,570,602
Number of Sequences: 37544
Number of extensions: 42257
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 14,793,348
effective HSP length: 26
effective length of database: 13,817,204
effective search space used: 262526876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)