Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12n19
         (138 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   3.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   3.1  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    19   5.4  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 76  RNFARQYRSRGHSFRSEARAGR 11
           +N+  ++RS   S + E R+GR
Sbjct: 44  QNWFDKFRSGDFSLKDEKRSGR 65


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 78  NVISHVNIGRV 46
           +VISHVNI  V
Sbjct: 479 DVISHVNISHV 489


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 78  NVISHVNIGRV 46
           +VISHVNI  V
Sbjct: 479 DVISHVNISHV 489


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 46  HATDIDVRNYVQVKKVP 96
           HA+D+D  N++  K  P
Sbjct: 177 HASDLDNCNHLMTKFEP 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,527
Number of Sequences: 438
Number of extensions: 493
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 26
effective length of database: 134,955
effective search space used:  2564145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)