Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12n14
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 33 0.040
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 31 0.16
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 31 0.16
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 31 0.16
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.16
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 30 0.38
SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr... 30 0.38
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 30 0.38
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 29 0.50
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 0.50
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 29 0.50
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 28 1.1
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 28 1.1
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 27 2.0
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 27 2.0
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s... 27 2.0
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 27 2.6
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 2.6
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 27 2.6
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 27 2.6
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 2.6
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 27 3.5
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 27 3.5
SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|... 27 3.5
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 26 4.6
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom... 26 4.6
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 6.1
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 26 6.1
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 6.1
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr... 25 8.1
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 25 8.1
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 8.1
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 33.1 bits (72), Expect = 0.040
Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 15/191 (7%)
Frame = +2
Query: 50 LERKKIESL-GRMTAMTQEEMVAGARTVAAGLEALRAEHTQLLAGL---ATNTEHENEKA 217
LE+++ +L + T + + L L+++HT L + N E +
Sbjct: 890 LEKQRFSTLEAKFTQQKNTSYSEREALLESSLSDLQSKHTSLESQYNYSLRNIEQLQAAS 949
Query: 218 SLVKKSIEAIDLGLGEAQVMTALASHLQSVEAEKQKLRTQVRRLCQENAWLRDELAAAQQ 397
L ++ +E + E ++ T+ +S+E K+ + +R+ L+DE+A++
Sbjct: 950 KLAEEMVERVKTEYDEYRLQTS-----ESLEKNHLKITSLEQRI----VILQDEIASSSL 1000
Query: 398 HLQA----SEQRVAQLEEENKHL-EFMASIRKYDSD-INEESDSNR-----TGQGEKKRE 544
+ SE RVA L EENKHL ++S R + + +E+D + T K RE
Sbjct: 1001 RCENITKDSETRVALLLEENKHLNNELSSHRNAEKQHLEKENDYKQQLLLVTEDLRKTRE 1060
Query: 545 DPMVELFPDDD 577
D EL D
Sbjct: 1061 DYEKELLRHAD 1071
Score = 30.7 bits (66), Expect = 0.21
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = +2
Query: 182 LATNTEHENEKASLVKKSIEAIDLGLGEAQVMTALASHLQSVEAEKQKLRTQVRRLCQEN 361
L TN E++N++ + +++ E Q + +AS S+ + Q+ L EN
Sbjct: 103 LKTNLENQNKRFDALTTENQSLRRANSELQEQSKIASEQLSIAKD------QIEALQNEN 156
Query: 362 AWLRDELAAAQQHLQASEQRVAQ 430
+ L +++ +A Q L E+R Q
Sbjct: 157 SHLGEQVQSAHQALSDIEERKKQ 179
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 31.1 bits (67), Expect = 0.16
Identities = 15/62 (24%), Positives = 35/62 (56%)
Frame = +2
Query: 287 ASHLQSVEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQLEEENKHLEFMA 466
A+H+ +E + ++L Q RRL ++ + E+ +++L++ + A L E+N ++ +
Sbjct: 363 AAHITELETKLKELHEQNRRLQRQKSLATQEIDLLRENLKSYDDEEAILSEKNTDMKKLE 422
Query: 467 SI 472
I
Sbjct: 423 RI 424
Score = 27.5 bits (58), Expect = 2.0
Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 1/163 (0%)
Frame = +2
Query: 5 FNNSELKIAVLLSSYLERKKIESLGRMTAMTQEEMVAGARTVAAGLEALRAEHTQLLAGL 184
F ++++ L+ E+K L R+T + ++++ + + +E +R E +
Sbjct: 78 FEREQIELQRKLAEEHEQKNSLQL-RLT-LVEKQLEEQSTSYQKEIEEVRNEKEATQVKI 135
Query: 185 ATNTEHENEKASLVKKSIEAIDLGLGEAQVMTALASH-LQSVEAEKQKLRTQVRRLCQEN 361
+ + ++ + +K IE D L E +++ LQ + L ++
Sbjct: 136 HELLDAKWKEIAELKTQIEKNDQALSEKNHEVMVSNQALQMKDTNLTNLEKLFADSREQL 195
Query: 362 AWLRDELAAAQQHLQASEQRVAQLEEENKHLEFMASIRKYDSD 490
ELAAA+Q LQ QLEE K + + K +++
Sbjct: 196 ETKCKELAAAEQQLQELSVHNQQLEESIKQVSSSIELEKINAE 238
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 31.1 bits (67), Expect = 0.16
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +2
Query: 257 LGEAQVMTALASHLQSV----EAEKQKLRTQVRRLCQENAWLRDELAAAQQHL-QASEQR 421
L E ++ + ASHL+ V E+ ++ Q+ QEN R+ +A + HL +E +
Sbjct: 908 LTELKIESTKASHLKQVSYRLESRLFEISKQLDNSEQENNKFRERIAELESHLSNYAEAK 967
Query: 422 VAQLEEENKHLEFMASIRKYDSDINE 499
+AQ E E + + S + D ++ E
Sbjct: 968 LAQ-ERELEQTRVLISDQSQDGELKE 992
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 31.1 bits (67), Expect = 0.16
Identities = 25/114 (21%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Frame = +2
Query: 194 TEHENEKASLVKKSIEAIDLGLGEAQVMTALASHLQSVEAEKQKLRTQVRRLCQENAWLR 373
+E ENE + ++ K + + + L + QS+ +KQ +Q + + W+R
Sbjct: 338 SEKENELSEILPKYNAIVSEADDLNKRIMLLKNQKQSL-LDKQSRTSQFTTKKERDEWIR 396
Query: 374 DELAAAQQHLQASEQRVAQLEEENKHL--EFMASI-RKYDSDINEESDSNRTGQ 526
++L +++ ++++ L+ E + E A + RK + +I+ ES +R Q
Sbjct: 397 NQLLQINRNINSTKENSDYLKTEYDEMENELKAKLSRKKEIEISLESQGDRMSQ 450
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 31.1 bits (67), Expect = 0.16
Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 9/144 (6%)
Frame = +2
Query: 140 LEALRAEHTQLLAGLAT-NTEHENEK--ASLVKKSIE--AIDLGLGEAQVMTALASHLQS 304
+E RAE+ L + L+ ++E+EN +S KS+E L E V L Q
Sbjct: 1034 IEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQKLLDEKDQR 1093
Query: 305 VEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVA----QLEEENKHLEFMASI 472
E ++L ++ +L +ENA ++DEL A ++ + A L+E++ LE + +
Sbjct: 1094 -NVELEELTSKYGKLGEENAQIKDELLALRKKSKKQHDLCANFVDDLKEKSDALEQLTNE 1152
Query: 473 RKYDSDINEESDSNRTGQGEKKRE 544
+ E+S+SN E++ +
Sbjct: 1153 KNELIVSLEQSNSNNEALVEERSD 1176
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 29.9 bits (64), Expect = 0.38
Identities = 26/125 (20%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Frame = +2
Query: 92 MTQEEMVAGARTVAAGLEALRAEHTQLLAGLA-TNTEHENEKASLVKKSIEAIDLGLGEA 268
+ + + + + + + LE L+ E+ QL LA ++E N + + ++ ++ + E
Sbjct: 411 LQKSKNTSSTKALTSHLEQLQQENQQLRMLLADADSEMMNLEYEIRQQMTREMEERVSEV 470
Query: 269 Q---VMTALASHLQSVEAEKQKLRTQ---VRRLCQENAWLRDELAAAQQHLQASEQRVAQ 430
+ + L Q +E QKL +++L EN+ + +A +Q ++ + +
Sbjct: 471 ERTFLTKLLEESAQGIEYTDQKLEKMGGWMKKLQDENSEKTETIAQLEQIIEELHEELRS 530
Query: 431 LEEEN 445
LEEE+
Sbjct: 531 LEEES 535
>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 112
Score = 29.9 bits (64), Expect = 0.38
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +2
Query: 239 EAIDLGLGEAQVMTALASHLQSVEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQ 418
+A+ LG+ + + LAS ++AE LR + L ++ + + A+QHLQ ++
Sbjct: 50 KAVYTSLGKMFMKSDLASVRTHLDAEMASLREDIEALQKKQTYHETTASNAEQHLQKIKE 109
Query: 419 RVA 427
++
Sbjct: 110 SIS 112
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 29.9 bits (64), Expect = 0.38
Identities = 26/129 (20%), Positives = 61/129 (47%)
Frame = +2
Query: 122 RTVAAGLEALRAEHTQLLAGLATNTEHENEKASLVKKSIEAIDLGLGEAQVMTALASHLQ 301
+T+++ + L ++ ++A + +H ++ S ++K+I +L + E L
Sbjct: 961 QTISSKYKELEKDYLNIMA----DYQHSSQHLSNLEKAINEKNLNIRELN--EKLMRLDD 1014
Query: 302 SVEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQLEEENKHLEFMASIRKY 481
+ +++ T+V+ L +ENA L+D+ + L + + ++ E E E A + +
Sbjct: 1015 ELLLKQRSYDTKVQELREENASLKDQCRTYESQLASLVSKYSETESELNKKE--AELVIF 1072
Query: 482 DSDINEESD 508
+I E D
Sbjct: 1073 QKEITEYRD 1081
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 29.5 bits (63), Expect = 0.50
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +2
Query: 308 EAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQLEEENKHLEFMASIRKYDS 487
E +KL+ +RLCQ+NA LR A ++ +SE V Q+ ++ + + I+ S
Sbjct: 3900 EISLEKLQNSWKRLCQKNAILRTHFAISE---DSSEPMVIQIVDKFEARSCLNQIKILPS 3956
Query: 488 DINEESDSNR 517
D+ R
Sbjct: 3957 RFTNIEDTLR 3966
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 29.5 bits (63), Expect = 0.50
Identities = 14/57 (24%), Positives = 32/57 (56%)
Frame = +2
Query: 299 QSVEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQLEEENKHLEFMAS 469
+S+E E+ L ++++ L +N LR ++ +++ + +++EE HL +AS
Sbjct: 431 RSLEEERDVLESKLQTLEDDNNSLRLMTSSLGNQIESLRTQNREIDEEKNHLRLLAS 487
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 29.5 bits (63), Expect = 0.50
Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 20/152 (13%)
Frame = +2
Query: 53 ERKKIESLGRMTAMTQEEMVAGARTVAAGLEALRAEHT--------------QLLAGLAT 190
E K+ES + +++ +R VAA L ++A+ + Q+ + T
Sbjct: 504 EVPKLESQLSQVKKSNDDLQKSSRDVAANLSDVKAKVSEIRKAYDEELAKAKQISLDIET 563
Query: 191 N---TEHENEKASLVKKSIEAID-LGLGEAQVMTALASHLQSVEAEKQKLRTQVRRLCQE 358
N TE N + S+++ ++ A+ + +V+ + + ++ + + +++L E
Sbjct: 564 NKAQTEQVNREYSILEATLNALQKQNKQKGEVLEQVVAESEAAKNMVESSNASIQQLKSE 623
Query: 359 NAWLRDELAAAQQHLQASE--QRVAQLEEENK 448
A E AQ HLQ E QR+ L+EE+K
Sbjct: 624 VA--DKEQTLAQLHLQLDEMTQRLVSLDEESK 653
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 521 GQGEKKREDPMVELFPDDDHDDNRNNKSMSPTP 619
G+GE D M EL +++ D+ +S SP P
Sbjct: 333 GRGELDELDDMEELTDEEEEDEEEEAESQSPEP 365
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 28.3 bits (60), Expect = 1.1
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +2
Query: 377 ELAAAQQHLQASEQRVAQLE---EENKHLEFMASIRKYDSDIN-EESDSNRTGQGEKKRE 544
ELAA Q+H +A + + Q E ++N L +ASI + + + SDS T Q + +
Sbjct: 320 ELAALQEHNEAHDAAMRQYELERQQNAMLPGLASIDGLQALPHLDFSDSAVTNQSHSQSQ 379
Query: 545 DPMVELFPDDDHDDNRNNKSMSPTP 619
+ + L + + S +PTP
Sbjct: 380 NSLHPLISQSETHSIFSALSETPTP 404
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 27.5 bits (58), Expect = 2.0
Identities = 30/147 (20%), Positives = 58/147 (39%)
Frame = +2
Query: 8 NNSELKIAVLLSSYLERKKIESLGRMTAMTQEEMVAGARTVAAGLEALRAEHTQLLAGLA 187
N+ E K+ L + + ++ S + E A + + R + Q +
Sbjct: 380 NSLEGKLQAHLEKFEQTERDISEKNEEVKSLREKAAKVKNDCTSEKKTRQSYEQQTVKIE 439
Query: 188 TNTEHENEKASLVKKSIEAIDLGLGEAQVMTALASHLQSVEAEKQKLRTQVRRLCQENAW 367
+ K +KKSIEA+ EA+ +L+SH + + QKL +++ L
Sbjct: 440 EQLKFLLNKEKKLKKSIEALSFEKSEAE--NSLSSH----DIDSQKLNSEIADLSLRLQQ 493
Query: 368 LRDELAAAQQHLQASEQRVAQLEEENK 448
L ++ LQ + ++ EE +
Sbjct: 494 EELSLDDIRKSLQGKTEGISNAIEEKQ 520
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +2
Query: 419 RVAQLEEENKHLEFMASIRKYDSDINEESDSNRTGQGEKKREDPMVELFPDDDHDDNRNN 598
R ++ +EN E + I+ S +EE + T GEK+ ++ +E P N NN
Sbjct: 67 RAVEIADENACEEPVLKIKSVSSTESEEEKESSTEIGEKQEKETHLE--PKTPVQTNTNN 124
Query: 599 KSM 607
+
Sbjct: 125 NHL 127
>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 98
Score = 27.5 bits (58), Expect = 2.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 642 TCWAKCIGGVGD 607
TCW KCIG +G+
Sbjct: 43 TCWPKCIGNIGN 54
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 272 VMTALASHLQSVEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQ 430
V TALAS + ++Q+ + R + A R+ AAAQ+ + E+R A+
Sbjct: 275 VDTALASDPRIKLFKEQEKAAKAARKWEREAGAREAAAAAQKKKEEEERRAAE 327
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 2.6
Identities = 23/112 (20%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Frame = +2
Query: 191 NTEHE---NEKASLVKKSIEAIDLGLGEAQVMTALASHLQSVEAEKQKLRTQVRRLCQEN 361
NTE E +EK + V++ + + L +Q HL+ ++ Q+ Q+ ++
Sbjct: 438 NTEIEARQSEKLNEVQEETQRLSQLLISSQPALTEVKHLKLCLSDSQEELLQLNAKLEKA 497
Query: 362 AWLRDELAAAQQHLQASEQRVAQLEEE--NKHLEFMASIRKYDSDINEESDS 511
+ DEL +A+ L + + ++++ + I Y++++N E S
Sbjct: 498 NIVIDELNSAKLKLSKQVEEESSMKDDLTEMNQRLKEQIESYENEVNSEITS 549
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 443 NKHLEFMASIRKYDSDINEESDSNRTGQGEKKRE-DPMVEL-FPDDDHDDNRNNKS 604
N H ++ + D+ + +S+S T + E D E+ D DHDD N+ S
Sbjct: 168 NDHATDKENLLESDASSSNDSESELTDSADNMNESDSESEIESSDSDHDDGENSDS 223
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 302 SVEAEKQKLRTQVRRLCQENA-WLRDELAAAQQHLQASEQRVAQLEEENKHLEFMASIRK 478
S+E E +R + LC+ + D + + + ++ Q E + KHL F A +RK
Sbjct: 126 SLEKEDGLIRRSMTSLCRHGPKGMCDYCSPLEPYDESYRQ-----ENKIKHLSFHAYLRK 180
Query: 479 YDSDINEESDS 511
+S++N+ + S
Sbjct: 181 INSNVNKYASS 191
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = +1
Query: 265 SSGNDGSGISPSVRRGREAKTPHPGPQAVPRERLAEGRAGCGSATPAGFRTTRSTAGGGE 444
SS + S +PS E K P A P E + ATP+G T ++ GE
Sbjct: 27 SSTKEESSNTPSTETQPEKKAEEPEAAAEPSESTSTPTNASSVATPSGTAPTSASLYVGE 86
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = +2
Query: 440 ENKHLEFMASIRKYDSDINEESDSNRTGQGEKKREDPMVELFPDDDHDDNRNN 598
+ K + + R D+D++ +D T + ++ +++LF D+ + N N+
Sbjct: 567 QKKSTMYDTNARANDTDVDFSNDKQNTHDFQISHDENLIQLFNDESNFFNLND 619
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Frame = -2
Query: 455 PNAYSPPPAVLRVVRKPAGVAEPQPARPSA-------RRSLGTACGPG 333
PN SP P++ R V P RPSA R+S+G PG
Sbjct: 561 PNITSPSPSISVTQRPAVNVGPPPYVRPSAPSKLPDTRQSIGDPLPPG 608
>SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 347 LCQENAWLRDELAAA-QQHLQASEQRVAQLEEENKHLE 457
L E W+R++ A +QHL + + E ENK +E
Sbjct: 130 LSDEPLWIREDAREAMKQHLDPRQDEAFRKELENKKIE 167
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 440 ENKHLEFMASIRKYDSD-INEESDSNRTGQGEKKREDPMVELFPDDDHDDNRNN 598
+N++++ +S D D I EE + +G++K D M+ +F ++D D N+
Sbjct: 2 QNEYVDMNSSSEDSDGDSILEEGRLRPSFRGQQKERD-MLGIFGEEDEDGFHNS 54
>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 305 VEAEKQKLRTQVRRLCQENAWLRDELA 385
V+A KLR + + C+ N WL +LA
Sbjct: 13 VQAIWPKLRKEAEKQCEVNPWLAKDLA 39
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 356 ENAWLRDELAAAQQHLQASEQRVAQLEEENK 448
EN +++ELA + LQ +R+A++ +E+K
Sbjct: 995 ENQRMKEELAGPLKILQEMARRIAKVSKESK 1025
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 6.1
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Frame = +2
Query: 269 QVMTALASHLQSVEAEKQ--KLRTQVRRL---CQENAWLRDELAAAQQHLQASEQRVAQL 433
++ AL+S ++ E KQ +L ++++L C+ N ++LAA +E+ V
Sbjct: 36 EITQALSSSYEAEEKAKQLKELDFRLQQLSSFCEWNKLAFEKLAANMDKHLGTERLVTFY 95
Query: 434 EEENKHLEFMASIRKYDSDINEESDSNRTGQGEKK 538
E++ L+F S + Y+S I ++ ++ E K
Sbjct: 96 EQKVCKLDFANSSKIYESMIALKALNSSQNDSEVK 130
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -1
Query: 267 ASPNPRSIASMLFLTREAFSFSCSVLVARPASSCVCSALRASSPAATVRAPATISSCV 94
A PN A+ + T + +V ++PA S V SA ASSP+ + A +++ V
Sbjct: 1033 ARPNTTQAAAPVTSTTTTIKQATTVSASKPAPSTVTSA--ASSPSNISKPSAPVANNV 1088
>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 162
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 362 AWLRDELAAAQQHLQASEQRVAQL-EEENKHLEFMASIRKYDSDINEESDSNRTGQGEKK 538
A+LR+ + +QQ + + +EN ++ A R D D+ + +++ G K
Sbjct: 12 AYLREAIKVSQQARDEGQHPFGCIIVDENDNVIMSAGNRVPDGDVTQHAETRAVGLITKT 71
Query: 539 RED 547
R D
Sbjct: 72 RRD 74
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 8.1
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +2
Query: 356 ENAWLRDELAAAQQHLQASEQRVAQLEEENKHLEFMASIRKYD--SDINEESDSNRTGQG 529
E W + LAA + + E+ + E E LEF++ + SD+ + S+++ +
Sbjct: 183 EEIWNK-VLAAREGLIDEGEE---EEEREEAELEFVSDDEDEEEISDLEDWLGSDQSMET 238
Query: 530 EKKREDPMVELFPDDDHDDNRNNK 601
+ E+ E D+D D++ K
Sbjct: 239 SESEEEESSESESDEDEDEDNKGK 262
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 443 NKHLEFMASIRKYDSDINEESDSNRTGQGEKKREDPMVELFPDDD 577
++ E +AS++ ++ + + SN G KKR+ V PD+D
Sbjct: 471 SRQSEEIASLQAENAVFSSDPASNDEKTGNKKRKKKSVSWKPDND 515
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,442
Number of Sequences: 5004
Number of extensions: 44983
Number of successful extensions: 217
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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