Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12n14
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   6.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   6.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   8.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.7  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 494 NEESDSNRTG--QGEKKREDPMVELFPDDDHDDNRNNKSMSPTPPMH 628
           N+++D+ + G  Q + KR         ++ +D+NRN+  +  +  +H
Sbjct: 498 NKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRNDNQVHHSSKLH 544


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = +2

Query: 353 QENAWLRDELAAA---QQHLQASEQRVAQLEEENKHLEFMA---SIRKYDSDINEESDSN 514
           Q N+W + ++  A   QQ +QA+   V Q ++ ++H   M        +   IN    S 
Sbjct: 763 QGNSWSQQQVQQAQQVQQQMQAAMAAVQQSQQRHQHAAQMIYGHQQSHHGLHINSSPSSV 822

Query: 515 RTGQGEK 535
           ++GQ ++
Sbjct: 823 QSGQQQQ 829


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = +2

Query: 98   QEEMVAGARTVAAGLEALRAEHTQLLAGL--ATNTEHENEKASLVKKSIEAIDLGLGEAQ 271
            Q++++A   T +   + +  E+     GL  AT   H N+     K+ I+     + +AQ
Sbjct: 1110 QQKILAKVLTSSNSGQLISVENLLAQKGLKLATTASHANQLNRQGKQVIQTQYQVVSQAQ 1169

Query: 272  VMTALASHLQSVEAEKQKLRTQVRRL 349
              +  +  + S + ++Q  + Q  R+
Sbjct: 1170 TSSGQSKIIASTQQQQQSQQAQTVRM 1195


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 569 DDDHDDNRNNKSMSPTP 619
           DDD  DN N KS    P
Sbjct: 89  DDDESDNENIKSQKEFP 105


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 386 AAQQHLQASEQRVAQLEEE 442
           A QQHLQA EQ +   +++
Sbjct: 190 AQQQHLQAHEQHMMYQQQQ 208


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 371 SARRSLGTACGPGCGVFASL 312
           S+    G++CGPG    A+L
Sbjct: 147 SSSAPTGSSCGPGAAAAAAL 166


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = +1

Query: 307 RGREAKTPHPGPQAVPRERLAEGRAGCGSATPAGF 411
           R  E +TP P  +   + R+         ATP  F
Sbjct: 177 RRNERRTPDPHDETAKKPRVLSPPLNNNDATPTDF 211


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 221 LVKKSIEAIDLGLGEAQVMTALASHL 298
           ++  S+ A + GLG +  +TAL+S L
Sbjct: 597 VIASSVSAGEEGLGNSLAITALSSIL 622


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 256 IGRSSGNDGSGISPSVRRGREAKTPHPGPQAVPRERLAEGRAG 384
           +G S+ +  SGI   +  G  A  P+P      R+ L +G  G
Sbjct: 338 VGASATHGASGIWGIIAIGLFADNPYPLNTTNGRKGLLKGGGG 380


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 492 ISLSYLRMEAMNSKC 448
           IS+SY   E +N+KC
Sbjct: 341 ISVSYPSTETLNTKC 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,996
Number of Sequences: 438
Number of extensions: 3678
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)