Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12n03
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    30   0.35 
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    29   0.81 
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    27   1.9  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   4.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.9  

>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 528 FYSWYARVLKQNRTLPDCLS*NRYSTHILNVHNLNRF 418
           FY  + + L  N++ P CLS ++ +  ++  +N +RF
Sbjct: 577 FYQSFQKALSMNKSQPSCLSFSKLNDFVVFFNNYSRF 613


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -2

Query: 614  WWLFSKLCNLLN 579
            W LFSKLCNLLN
Sbjct: 1107 WGLFSKLCNLLN 1118


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 187 AFTWSNSNKIWWRFLCRATKRSATKNCLRKTTRTWRLPWKTQTASATNAPTSDG--FRSK 360
           A + SN+ + +W  +  A K  ++        RTW   WK++T      PTSDG   RS 
Sbjct: 400 ALSSSNTREKYWDNVLTAHKNDSS-------ARTWN--WKSKTLGQHVLPTSDGTSVRSV 450

Query: 361 CTA 369
           C +
Sbjct: 451 CVS 453


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 474 NSREACDSVLKREHTNCKSFNLKHKNFDNPTYFDYV*KVAKFAKE 608
           N+RE   S+ + + T+C SF L+H  F+  T+  Y   + K  K+
Sbjct: 565 NTREVNSSIEELKITDCLSFLLEHNIFN--TFLVYNEGIVKLNKD 607


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +3

Query: 165  YVMNAPMGFYVVKFKQNLVAVSVPRDETFCNKELFTENNAYVAFAVENSNCERYQCADKR 344
            ++MN+P+    VK K  L+   V  +  F   E     N Y++F  +    E Y+ ++  
Sbjct: 2215 WIMNSPVPVPTVKEKAALLLKMVTFEGRFSQNEQNDLFNKYLSFIADIYEMEPYKNSE-- 2272

Query: 345  RLSFKMHS 368
             L+F++ +
Sbjct: 2273 -LTFRLEA 2279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,192
Number of Sequences: 5004
Number of extensions: 55013
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)