Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12n01
         (687 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...   340   1e-93
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...   340   1e-93
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...   340   1e-93
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...   340   1e-93
X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...   339   2e-93
BT029103-1|ABJ17036.1|  823|Drosophila melanogaster IP14290p pro...    31   2.0  
AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA...    31   2.0  
AE014296-2238|AAF49848.1|  954|Drosophila melanogaster CG11274-P...    30   2.6  
AF158179-1|AAD48780.1| 1711|Drosophila melanogaster Chiffon-2 pr...    29   7.9  
AF158178-1|AAD48779.1| 1695|Drosophila melanogaster Chiffon prot...    29   7.9  
AE014134-2711|AAG22437.1| 1695|Drosophila melanogaster CG5813-PB...    29   7.9  
AE014134-2710|AAF53530.1| 1711|Drosophila melanogaster CG5813-PA...    29   7.9  

>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  340 bits (836), Expect = 1e-93
 Identities = 160/172 (93%), Positives = 165/172 (95%)
 Frame = +1

Query: 172 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 351
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 352 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 531
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 532 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTS 687
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSAPVPKKLL MAG++DCYTS
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTS 208


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  340 bits (836), Expect = 1e-93
 Identities = 160/172 (93%), Positives = 165/172 (95%)
 Frame = +1

Query: 172 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 351
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 352 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 531
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 532 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTS 687
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSAPVPKKLL MAG++DCYTS
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTS 208


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score =  340 bits (836), Expect = 1e-93
 Identities = 160/172 (93%), Positives = 165/172 (95%)
 Frame = +1

Query: 172 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 351
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 352 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 531
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 532 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTS 687
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSAPVPKKLL MAG++DCYTS
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTS 208


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score =  340 bits (836), Expect = 1e-93
 Identities = 160/172 (93%), Positives = 165/172 (95%)
 Frame = +1

Query: 172 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 351
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 352 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 531
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 532 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTS 687
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSAPVPKKLL MAG++DCYTS
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTS 208


>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score =  339 bits (833), Expect = 2e-93
 Identities = 159/172 (92%), Positives = 165/172 (95%)
 Frame = +1

Query: 172 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 351
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 352 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 531
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 532 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTS 687
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSAPVP+KLL MAG++DCYTS
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPRKLLTMAGIEDCYTS 208


>BT029103-1|ABJ17036.1|  823|Drosophila melanogaster IP14290p
           protein.
          Length = 823

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 178 LPCRAHDHGRDHDRVHEDRRGLYLHRVIRIRREN-RHVHRLEQRPPLLN 35
           L C  H    D  R+H  ++GL +  V+ + REN   VH + ++  LLN
Sbjct: 359 LDCTLHIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 407


>AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA
           protein.
          Length = 1958

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 178 LPCRAHDHGRDHDRVHEDRRGLYLHRVIRIRREN-RHVHRLEQRPPLLN 35
           L C  H    D  R+H  ++GL +  V+ + REN   VH + ++  LLN
Sbjct: 325 LDCTLHIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 373


>AE014296-2238|AAF49848.1|  954|Drosophila melanogaster CG11274-PA
            protein.
          Length = 954

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 541  PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 663
            PH+V  K  G  G + + L+P   G G+++  + K+L + A
Sbjct: 907  PHSVAAKRNGNAGKLAL-LLPGASGAGVINEDLEKQLRERA 946


>AF158179-1|AAD48780.1| 1711|Drosophila melanogaster Chiffon-2
            protein.
          Length = 1711

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 446  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 550
            RKSP    + L+L+SC+  Q ++    T SE+  P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070


>AF158178-1|AAD48779.1| 1695|Drosophila melanogaster Chiffon protein.
          Length = 1695

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 446  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 550
            RKSP    + L+L+SC+  Q ++    T SE+  P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070


>AE014134-2711|AAG22437.1| 1695|Drosophila melanogaster CG5813-PB,
            isoform B protein.
          Length = 1695

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 446  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 550
            RKSP    + L+L+SC+  Q ++    T SE+  P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070


>AE014134-2710|AAF53530.1| 1711|Drosophila melanogaster CG5813-PA,
            isoform A protein.
          Length = 1711

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 446  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 550
            RKSP    + L+L+SC+  Q ++    T SE+  P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,122,370
Number of Sequences: 53049
Number of extensions: 724978
Number of successful extensions: 3264
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2767
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)