Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12m21
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 52 7e-08
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 36 0.005
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 29 0.57
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 27 1.7
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 27 2.3
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 26 5.3
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 7.0
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 7.0
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch... 25 9.3
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 25 9.3
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 52.0 bits (119), Expect = 7e-08
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +1
Query: 415 LPDQSINEYIRVPDRMVGLIIGRGGEQITRLQAESGCKIQMA-PPTDGNPDRLCTLTGSR 591
L + + I +P MVG IIGRGG +I+ ++ SG KI +A P D +R+ T+TG+
Sbjct: 316 LQQPKVTQNISIPADMVGCIIGRGGSKISEIRRTSGSKISIAKEPHDETGERMFTITGTH 375
Query: 592 DAIQRAKELVNQ 627
+ ++A L+ Q
Sbjct: 376 EENEKALFLLYQ 387
Score = 32.7 bits (71), Expect = 0.046
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +1
Query: 457 RMVGLIIGRGGEQITRLQAESGCKIQMAPPTDGNPDRLCTLTGSRDAIQRAKELVNQI 630
R G+IIG+ G+ + L++ + K + DR+ T++G + + RA + I
Sbjct: 103 REAGIIIGKAGKNVAELRSTTNVKAGVTKAVPNVHDRVLTISGPLENVVRAYRFIIDI 160
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 35.9 bits (79), Expect = 0.005
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +1
Query: 430 INEYIRVPDRMVGLIIGRGGEQITRLQAESGCKIQMAPPTDGNPDRLCTLT--GSRDAIQ 603
+ E I VP R + IIGR G TR E + P +P+ T+T GS + +
Sbjct: 1039 VEEKIEVPQRCISSIIGRMGS--TRRDIERKTSTMLNIPNVLDPEETVTITIVGSPENCE 1096
Query: 604 RAKELVNQIV 633
+AKE++ + V
Sbjct: 1097 KAKEMIQEKV 1106
Score = 35.5 bits (78), Expect = 0.007
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1
Query: 439 YIRVPDRMVGLIIGRGGEQITRLQAESGCKIQMAPPTDGNPDRLCTLTGSRDAIQRAKEL 618
Y+ +P + IIG GG I +++ + KI + P T G D + + GSR + +AK+L
Sbjct: 1211 YLGIPTNLHRRIIGSGGSIINKIRKIAQVKIDV-PRTPG--DEIVVVQGSRAGVVKAKDL 1267
Query: 619 V 621
+
Sbjct: 1268 I 1268
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 29.1 bits (62), Expect = 0.57
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 238 KRPLEDGPEPT-PKKLAPVEPVYTPQPPV-MNFVDS 339
KRP P+PT +AP +P PPV MNF D+
Sbjct: 272 KRPASIAPQPTGASTIAPQPTGTSPSPPVEMNFPDT 307
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = -1
Query: 387 RTCY---HTSATTNRNWRYTVNKIHNWRL 310
RTC+ HTS+T WRY V K H R+
Sbjct: 152 RTCHTDTHTSSTCPLIWRYYVEKEHPVRI 180
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/63 (26%), Positives = 23/63 (36%)
Frame = +1
Query: 112 QIVPNMSDYSSMATLQNNSQTAGYATXXXXXXXXXXKIGGGSKRPLEDGPEPTPKKLAPV 291
Q P S ++S + LQN T K G K +D P T L+PV
Sbjct: 157 QRTPPSSSHTSSSILQNTPVTPSRKIFHYLSPRDRNKSSYGKKAQYQDNPNRTIYSLSPV 216
Query: 292 EPV 300
+
Sbjct: 217 RSI 219
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Frame = +1
Query: 472 IIGRGGEQITRLQAESGCKIQMA--------PPTDGNPDR---LCTLTGSRDAIQRAKEL 618
I+G G + +Q E+ ++Q+ P T+ D LC ++ +AIQRAK L
Sbjct: 309 IVGPQGAYVKHIQQETRTRVQIKGQGSAFIEPSTNRESDEPIHLCIMSHDPNAIQRAKVL 368
Query: 619 VNQIV 633
++
Sbjct: 369 CEDLI 373
>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 25.4 bits (53), Expect = 7.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 357 WWWRTYDSRCGPWQWTNK 410
W W TYD++ PW+ K
Sbjct: 40 WLWPTYDAQTIPWKKKKK 57
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 463 VGLIIGRGGEQITRLQAESGCKI 531
+GL+IG G + ++A+SG KI
Sbjct: 203 IGLLIGPRGHTLKDMEAKSGAKI 225
>SPBC1773.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 70 PFFFHGCVKTRLKVQIVPNMSDYSSMATLQNNSQTAG 180
P F +GC L+ Q+ P M+ ++ L NS G
Sbjct: 24 PLFSNGCKNVHLEAQLHPRMN--ATFVMLARNSDLPG 58
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 25.0 bits (52), Expect = 9.3
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = +3
Query: 339 CIANCGWWWRTY 374
C N WWWR++
Sbjct: 548 CSENYNWWWRSF 559
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,538
Number of Sequences: 5004
Number of extensions: 42718
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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