Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12m18
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual    96   5e-21
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    29   0.47 
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    27   1.9  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    27   3.3  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    27   3.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   4.4  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   5.8  

>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 95.9 bits (228), Expect = 5e-21
 Identities = 57/156 (36%), Positives = 85/156 (54%), Gaps = 1/156 (0%)
 Frame = +3

Query: 111 VMANWPALGSIILPNVGGWANGLFFAGQIRKDNSEKSWYDELKKPSWTPPKWVFGPAWTV 290
           +  NW    + ++P   GW  G  +  + RKD      Y+  K+P + PP   FGPAWT+
Sbjct: 11  ISKNW--WSASLVPVACGWFIGNSY--KPRKD------YENKKQPKFHPPASAFGPAWTL 60

Query: 291 LYSSMGYASYLIWEECDGFTEDAVLPLT-LYGVQLLLNWSWTPIFFGLKDFKLAFIEISV 467
           LY +MGYAS+L ++       +A    + LY  QL  N++W P+F+GL   KLA  ++ +
Sbjct: 61  LYLTMGYASHLAYKADPLMITNASRNGSILYIAQLAANFAWMPLFYGLAKPKLALADLGI 120

Query: 468 LSGAAVATTLSFGSVNKTAGLLLVPYLAWLGYASSL 575
           L+G       ++  +  TA   L+PYLAWLGYA  L
Sbjct: 121 LTGLVGWLAKTWWPLAPTASKWLIPYLAWLGYAGYL 156


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = -1

Query: 562 YPSQAKYGTSNKPAVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSC- 386
           Y S A+ GT    A L T P+  V  T    +T++S   ++K++    +G+ ++L+ SC 
Sbjct: 123 YASPAEPGT----APLGTYPHPCVHLTV---NTDVSSPLAIKTYVSSPVGITERLADSCA 175

Query: 385 ---TPYNVR 368
              TP+ +R
Sbjct: 176 FVPTPFTIR 184


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 412 VQDQLSSSCTPYNVRGRTASSVKPSHSSQMR 320
           +Q  LSS  T  NVR + A+ V+PS S   R
Sbjct: 369 IQSTLSSRTTTGNVRTKAANIVRPSSSINRR 399


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +3

Query: 315 SYLIWEECDGFTEDAVLPLTLYGVQLLLNWSWTPIFFGLK 434
           ++++ ++C+GF+  + L         L+++ W P+ +G K
Sbjct: 211 NFILGQDCNGFSLGSFLVRRSDWTSRLMDFLWDPVVYGQK 250


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +1

Query: 241 SQAGLPQSGYLVQLGLFSTAAWDMPLTSSGRNVMVLLKMQSYLSHCTEYSCYSTGLGLLF 420
           +Q+GL  SG + + GLF         T    NV  LL +   LSH   YS     +   F
Sbjct: 478 NQSGL--SGSVFRYGLFENYVDSCVTTDEAFNVCDLLSISDCLSHDFPYSYTGDEISTWF 535

Query: 421 S 423
           S
Sbjct: 536 S 536


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 179  QSIGPSTDIWEDNRTECRPISHYEISRI 96
            Q I   TD+WE +  EC  +    +S++
Sbjct: 980  QGINNLTDVWETSNGECNVLMETRLSKV 1007


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +1

Query: 478 QQWQRHCHSAVSIRQPVCYSYHTWLGSDMPAPFLTTS 588
           Q+W   CH ++      CY     +   +PA  +T S
Sbjct: 799 QKWNEACHVSIHSLMLCCYELPVSIRKQLPAILVTLS 835


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,143,980
Number of Sequences: 5004
Number of extensions: 70704
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)