Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12m16
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0392 - 13432385-13432622,13432734-13433104 32 0.54
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220... 30 1.6
12_01_0025 + 203476-203655,205006-205233,205317-206000 29 3.8
10_08_0333 - 16850267-16851802 29 3.8
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 29 5.0
03_02_0578 + 9603118-9605633,9605766-9605781 29 5.0
01_01_0574 + 4263247-4263615,4263945-4263992,4264308-4264514,426... 29 5.0
07_01_0313 + 2216498-2216953 28 6.6
03_04_0061 - 16949038-16950006 28 6.6
>05_03_0392 - 13432385-13432622,13432734-13433104
Length = 202
Score = 31.9 bits (69), Expect = 0.54
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +2
Query: 554 RTPALLNLVARNGWMSIIVTLGLMIGSGMVVRGMEYTPGFGAKQLAWMAHTGIM 715
R P+ R+ ++V G ++G G V G EY G + W H ++
Sbjct: 5 RNPSRHRRPRRSDLRDVVVDRGEVVGGGGKVEGREYVGGLAGHLVVWAPHIALL 58
>04_03_0153 +
11919769-11919880,11920190-11920488,11921909-11922024,
11922113-11922248,11922959-11923006,11924130-11924228,
11924317-11924385,11924465-11924599,11924687-11924755,
11925221-11925276,11925465-11925624,11926534-11926698,
11927484-11927568,11927646-11927849,11928396-11928487,
11928571-11928613,11930727-11930884,11931520-11931630,
11931947-11932012,11933716-11933784,11934181-11934255,
11934330-11934506,11934598-11934683,11936259-11936313,
11936901-11936939,11938105-11938230,11938319-11938432,
11939208-11939265,11939485-11939623,11939698-11939783,
11939842-11940041
Length = 1148
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +2
Query: 155 LIMLSRMCIGRSAFNVTQSLKSPVPQNFVPRNYVVRNYAREPRTRVATRSQPTLRERLMA 334
L+ L ++ I SA+ V P+P NF+ R +VR P R + RS T A
Sbjct: 40 LLFLPKIDIPFSAYLVLHKSGIPLPPNFLHRRDLVRARGILPVRRSSARSSTTALTCPAA 99
Query: 335 PAGPNA 352
PN+
Sbjct: 100 AGDPNS 105
>12_01_0025 + 203476-203655,205006-205233,205317-206000
Length = 363
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 379 WSLCSWTSCSVLLWLWGKTRYSSGISPLATICE 477
W L +W LLWLW R G PL + E
Sbjct: 9 WVLATWWG-EPLLWLWQPFRAGGGAGPLGHLLE 40
>10_08_0333 - 16850267-16851802
Length = 511
Score = 29.1 bits (62), Expect = 3.8
Identities = 28/99 (28%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Frame = -1
Query: 721 SSHNTSVRHPC*LFSPKSRCVLHSSYYHARTNHQT--QCDNNGHPSISCYQI*KCGCSEN 548
SS+ S P L + L+ SY H T Q PSI + CG N
Sbjct: 369 SSNEISGAIPPSLAGISTLSTLNLSYNHLSGKIPTGNQLQTFTDPSIYSHNSGLCGPPLN 428
Query: 547 SNCTTSSQHQRTRDVSICCFYTFFHILWPKVRFLKSTWF 431
+CT +S RD C F++ + V F WF
Sbjct: 429 ISCTNASVASDERDCRTCEDQYFYYCVMAGVVFGFWLWF 467
>10_08_0911 -
21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 316 SGETHGTCWTKCIQLGQGCISWSLCSWTSCSV 411
SG+ HG W + + G + +S + SCS+
Sbjct: 58 SGQGHGNSWIEVLSTGSSVVDFSSSAAESCSI 89
>03_02_0578 + 9603118-9605633,9605766-9605781
Length = 843
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +2
Query: 413 YYGSGVKPGTLQESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVAVF-RTPALLNLVARN 589
Y G L S L P K+R++ G G L GSA A+ R N++ +
Sbjct: 584 YMAKGTLRSHLYGSDLPPLPWKQRLEACIGAARGLHYLHTGSAKAIIHRDVKSANILLDD 643
Query: 590 GWMSIIVTLGL 622
G+M+ + GL
Sbjct: 644 GFMAKVADFGL 654
>01_01_0574 +
4263247-4263615,4263945-4263992,4264308-4264514,
4264670-4264826,4264958-4265041,4265785-4265909,
4268100-4268218,4268535-4268619,4269087-4269134
Length = 413
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 254 VVRNYAREPRTRVATRSQPTLRERLMA 334
V+RNY P R+ T++Q RER+++
Sbjct: 110 VLRNYVPSPSQRIRTQNQREYRERILS 136
>07_01_0313 + 2216498-2216953
Length = 151
Score = 28.3 bits (60), Expect = 6.6
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = -2
Query: 729 AMTAPIIPVCAIHANCLAPNPGVYSIPLTTMPEPIIRPNVTIMDIHPFLA--TKFRSAGV 556
A+T P IP A+ L P P + ++P TMP P V + + P A T + V
Sbjct: 60 AVTLPPIP--AVPKVTLPPMPAIPTVPAVTMPPMPAVPAVPAVTLPPMPAVPTVPPNTVV 117
Query: 555 LKTAT--ALPAVSTKEPAMYPYV 493
+ A ALP V+ A P V
Sbjct: 118 VPAAVVPALPKVALPPMAAVPNV 140
>03_04_0061 - 16949038-16950006
Length = 322
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/64 (18%), Positives = 27/64 (42%)
Frame = +2
Query: 425 GVKPGTLQESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARNGWMSI 604
GV T++ S W E ++ YG++ ++ + + V + + A W+++
Sbjct: 72 GVAKSTVEASQPWLAAAAELLQVIYGWLVAAIAVAVENLPGVAKNTVEYTVEASQPWLAV 131
Query: 605 IVTL 616
L
Sbjct: 132 AAKL 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,431,945
Number of Sequences: 37544
Number of extensions: 450316
Number of successful extensions: 1292
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -