Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12m16
(733 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88168-4|AAC24402.1| 342|Caenorhabditis elegans Hypothetical pr... 119 2e-27
Z81118-9|CAM84694.1| 208|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 31 0.84
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 31 0.84
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 29 2.6
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 29 2.6
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 29 2.6
U21323-2|AAM22051.1| 155|Caenorhabditis elegans Hypothetical pr... 29 3.4
U21323-1|AAM22050.1| 542|Caenorhabditis elegans Hypothetical pr... 29 3.4
U55369-10|AAK52180.2| 389|Caenorhabditis elegans Hypothetical p... 28 5.9
U21324-19|AAK68224.1| 407|Caenorhabditis elegans C-type lectin ... 28 5.9
AF016445-6|AAC69053.1| 250|Caenorhabditis elegans Hypothetical ... 28 5.9
>U88168-4|AAC24402.1| 342|Caenorhabditis elegans Hypothetical
protein K11H12.8a protein.
Length = 342
Score = 119 bits (286), Expect = 2e-27
Identities = 64/146 (43%), Positives = 82/146 (56%), Gaps = 1/146 (0%)
Frame = +2
Query: 299 RSQPTLRERLMAPAGPNAFXXXXXXXXXXXXXXXXXXCYYGSGVKPGT-LQESHLWPQYV 475
R+ PTL+ERL+ P F YYG K + LQ+S +WP YV
Sbjct: 50 RTGPTLKERLLGPTTGKPFVYGTYALAGASVFGVGALMYYGLVSKEQSILQKSAIWPSYV 109
Query: 476 KERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARNGWMSIIVTLGLMIGSGMVVRGM 655
+ERI TTY Y+AGSL LTA S VA R+ A++ L A G MS+ T+ MI SGM+ R +
Sbjct: 110 RERISTTYAYLAGSLALTAVSGVAASRSAAIMRLTAGGGMMSLFGTMAAMIASGMLARSI 169
Query: 656 EYTPGFGAKQLAWMAHTGIMGAVIAP 733
+Y AK LAW H G++GAV AP
Sbjct: 170 DYESTV-AKHLAWALHCGVLGAVFAP 194
>Z81118-9|CAM84694.1| 208|Caenorhabditis elegans Hypothetical
protein T10G3.8 protein.
Length = 208
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 233 NFVPRNYVVRNYAREPRTRVATRSQPTLRERLMAP 337
+ VP+N V +N + +PR RV TR P+ +L P
Sbjct: 119 SLVPKNEVKKNASPQPRVRVITRKSPSPLRKLSTP 153
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
F40E10.4 protein.
Length = 1410
Score = 31.1 bits (67), Expect = 0.84
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +1
Query: 121 KKFKSC*NKRIINYVITNVYRSLGVQCNAESKIASTTKFCTEKLCGQKLCTRT--SNKG- 291
+ K C + IN V N+ ++L N E ++T FC CG CT S KG
Sbjct: 1254 ESLKGCISSITINEVPINLQQALE-NVNTEQSCSATVNFCAGIDCGNGKCTNNALSPKGY 1312
Query: 292 RYTLTTHTSGE 324
+H SGE
Sbjct: 1313 MCQCDSHFSGE 1323
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 31.1 bits (67), Expect = 0.84
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +1
Query: 121 KKFKSC*NKRIINYVITNVYRSLGVQCNAESKIASTTKFCTEKLCGQKLCTRT--SNKG- 291
+ K C + IN V N+ ++L N E ++T FC CG CT S KG
Sbjct: 1254 ESLKGCISSITINEVPINLQQALE-NVNTEQSCSATVNFCAGIDCGNGKCTNNALSPKGY 1312
Query: 292 RYTLTTHTSGE 324
+H SGE
Sbjct: 1313 MCQCDSHFSGE 1323
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 601 GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 494
GHP IS C C+ N+N T S S H + D +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 601 GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 494
GHP IS C C+ N+N T S S H + D +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 601 GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 494
GHP IS C C+ N+N T S S H + D +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 601 GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 494
GHP IS C C+ N+N T S S H + D +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961
>U21323-2|AAM22051.1| 155|Caenorhabditis elegans Hypothetical
protein C45G9.6b protein.
Length = 155
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 175 VYRSLGVQCNAESKIASTTKFCTEKLCGQKLCTRTSNKG 291
V R G CN+ + S +CT + G K+C TSN G
Sbjct: 58 VQRDEGGYCNSNTDCRSGL-YCTASVNGVKICLSTSNGG 95
>U21323-1|AAM22050.1| 542|Caenorhabditis elegans Hypothetical
protein C45G9.6a protein.
Length = 542
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 175 VYRSLGVQCNAESKIASTTKFCTEKLCGQKLCTRTSNKG 291
V R G CN+ + S +CT + G K+C TSN G
Sbjct: 58 VQRDEGGYCNSNTDCRSGL-YCTASVNGVKICLSTSNGG 95
>U55369-10|AAK52180.2| 389|Caenorhabditis elegans Hypothetical
protein C18C4.9 protein.
Length = 389
Score = 28.3 bits (60), Expect = 5.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 493 CFYTFFHILWPKVRFLKSTWFYPR 422
C + F H+ P++ F++ TW + R
Sbjct: 190 CIHQFLHLTQPQILFVRKTWNHAR 213
>U21324-19|AAK68224.1| 407|Caenorhabditis elegans C-type lectin
protein 6 protein.
Length = 407
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 391 SWTSCSVLLWLWGKTRYSSGISP 459
SW S SVL WL G T + ISP
Sbjct: 219 SWPSTSVLTWLDGSTSDYNNISP 241
>AF016445-6|AAC69053.1| 250|Caenorhabditis elegans Hypothetical
protein T05B4.10 protein.
Length = 250
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/73 (26%), Positives = 30/73 (41%)
Frame = +1
Query: 166 ITNVYRSLGVQCNAESKIASTTKFCTEKLCGQKLCTRTSNKGRYTLTTHTSGETHGTCWT 345
+TN L + CN +C ++ CG+ C T+ G T+T+ GTC +
Sbjct: 163 VTNCGNDLSI-CNTVGMQTFVNTYC-QRTCGR--CPSTTASGSVTVTS-------GTCTS 211
Query: 346 KCIQLGQGCISWS 384
C +WS
Sbjct: 212 YIADSSSNCAAWS 224
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,698,058
Number of Sequences: 27780
Number of extensions: 401101
Number of successful extensions: 1202
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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