Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12m04
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    26   1.6  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   3.8  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   3.8  
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    24   6.7  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    24   6.7  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    24   8.8  

>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -3

Query: 268 PYSLFYYKTLASRYPPAQSSASSNKRLAFFSI-ISSLHFLHAATLLQPLVEYSASQELHW 92
           P SLF      +  P ++SS+  +K+ +  S  + S   L   T   PL+   + +  HW
Sbjct: 42  PVSLFCSSPYPNLPPHSRSSSLESKKPSVASQDVKSDGTLPIGTNNNPLIPSHSQESSHW 101

Query: 91  SMKFTKVTSA 62
           +++   + SA
Sbjct: 102 TIRHESMPSA 111


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 237 HHGILQPSHQHHQTKDLHSSP 175
           H G+L P HQH     + +SP
Sbjct: 16  HPGLLTPDHQHAAILSVQNSP 36


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 18  LWIFYSFLPP*ILRIAEVTLVN 83
           L +FY+F+PP       VTL+N
Sbjct: 277 LLVFYTFIPPRFTIQTSVTLIN 298


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 66  EVTLVNFMDQCSS*EAEYSTNGCNRVAAC 152
           EV   N MD+C +  +E    GC+ +  C
Sbjct: 259 EVICENLMDRCIASNSESCGIGCDNMTIC 287


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 185 ILLHYQQSSFFACSYPVTTISRIFCLSGTAL 93
           +L +  Q+  F CS  +T     FCLSG+ +
Sbjct: 89  VLRYPAQAMCFRCSLCMTVNDVYFCLSGSQI 119


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 161 KTADNGEECKSFV 199
           K A+NG +C+SFV
Sbjct: 238 KVAENGADCRSFV 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,137,659
Number of Sequences: 5004
Number of extensions: 19889
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)