Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12m04
         (372 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    25   0.69 
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    24   2.1  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    24   2.1  
AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein ...    24   2.1  
AJ302660-1|CAC35525.1|  195|Anopheles gambiae hypothetical prote...    23   4.9  

>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 151 HAATLLQPLVEYSASQELHWSMKF 80
           +A  + +P+V Y A   +HWS  F
Sbjct: 447 YALVMARPMVLYQADHPVHWSPVF 470


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 207 HHQTKDLHSSPLSAVFIFCMQLP 139
           HH+T D+H  P     +F   LP
Sbjct: 319 HHRTADIHEMPPWIKSVFLQWLP 341


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 207 HHQTKDLHSSPLSAVFIFCMQLP 139
           HH+T D+H  P     +F   LP
Sbjct: 319 HHRTADIHEMPPWIKSVFLQWLP 341


>AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein
           protein.
          Length = 705

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 15  LLWIFYSFLPP*ILRIA-EVTLVNFMDQC 98
           LLW    F PP +L +A ++ LV ++++C
Sbjct: 471 LLWFGVLFAPPLLLLVALKLLLVFYVNKC 499


>AJ302660-1|CAC35525.1|  195|Anopheles gambiae hypothetical protein
           protein.
          Length = 195

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 172 ISSLHFLHAATLLQPLVEYSASQELHWS 89
           I S+  L AA LLQPL+       L WS
Sbjct: 6   IISVPLLSAAVLLQPLLAAPIFWFLPWS 33


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 284,468
Number of Sequences: 2352
Number of extensions: 4715
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 28374390
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)