Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12m04
         (372 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66513-8|CAA91340.2|  563|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z75550-2|CAA99928.2|  421|Caenorhabditis elegans Hypothetical pr...    26   7.5  
U23514-8|AAC46540.2|  467|Caenorhabditis elegans Hypothetical pr...    26   9.9  
AC006714-7|AAK29718.3|  612|Caenorhabditis elegans Hypothetical ...    26   9.9  

>Z66513-8|CAA91340.2|  563|Caenorhabditis elegans Hypothetical
           protein F54D5.15a protein.
          Length = 563

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/58 (25%), Positives = 31/58 (53%)
 Frame = -3

Query: 241 LASRYPPAQSSASSNKRLAFFSIISSLHFLHAATLLQPLVEYSASQELHWSMKFTKVT 68
           +++++PPAQSSA +  R+   S  S+    +  T+      +   +E++ S+K  + T
Sbjct: 9   ISNKFPPAQSSAPNPSRMFCVSYASTQQSANTPTI------HEQQEEIYSSLKKVRTT 60


>Z75550-2|CAA99928.2|  421|Caenorhabditis elegans Hypothetical
           protein T22C1.3 protein.
          Length = 421

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 182 LLHYQQSSFF-ACSYPVTTISRIFCLSGTALVHEVYQSDFSYS 57
           +LH+    F  +  +P  T++++  L     VH+VY+  F Y+
Sbjct: 301 ILHFTIIGFLVSIFFPYPTLNQVSLLLAFLPVHDVYKKHFRYT 343


>U23514-8|AAC46540.2|  467|Caenorhabditis elegans Hypothetical
           protein F48E8.2 protein.
          Length = 467

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 111 AEYSTNGCNRVAACKK*RLLIMEKNASLLFDDADD 215
           AE  TN   R A     RL  +EKN  LL+DD +D
Sbjct: 305 AEEETNPIKRAAMD---RLKEIEKNDELLYDDQED 336


>AC006714-7|AAK29718.3|  612|Caenorhabditis elegans Hypothetical
           protein Y119D3B.11 protein.
          Length = 612

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 179 LHYQQSSFFACSYPVTTISRIFCLS 105
           + Y ++ FFAC Y ++ +SR   L+
Sbjct: 282 MKYLKNRFFACDYSISALSRAIQLA 306


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,263,507
Number of Sequences: 27780
Number of extensions: 113761
Number of successful extensions: 295
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)