Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12m03
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   2.5  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    25   3.3  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    25   4.4  
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    24   7.7  

>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 234 RTIFLLYSL*VLQPIKNNYIDDTNSNYSLISPPKNYIYTLKKNQTIFWQRCPNKKK 401
           R IF    L  LQ   NN  +  +SNY  + PP+   YT    QT  + +  +  K
Sbjct: 114 RGIFSKEILLSLQERFNNAENSGHSNYYPVGPPEWAPYTRLMTQTSLYAKSAHSTK 169


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 294 DDTNSNYSLISPPKNYIYTLKKNQTIFWQRCPNK 395
           D +NS    +SPP  + Y +  +  I   +C N+
Sbjct: 120 DSSNSIAERVSPPPGFCYDVHPHNNIACAKCGNE 153


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 282 NNYIDDTNSNYSLISPPKNYI 344
           N Y+ D+ S YS   PP+N+I
Sbjct: 2   NAYVRDSESVYSESYPPENFI 22


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 270 QPIKNNYIDDTNSNYSLISPPKNYIYTLKKNQTI 371
           +P  + YI+D +S+ + I PPK     +  +Q +
Sbjct: 89  RPFLSEYIEDHHSSCNGIKPPKPQFEPVANSQVL 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,349,110
Number of Sequences: 5004
Number of extensions: 22072
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)