Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12m01
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.2  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   9.8  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   9.8  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.8  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   9.8  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 248  YSLTLFVAIVQQRFSRRTG 192
            Y LTLF+AI+   ++ RTG
Sbjct: 1203 YILTLFIAIIISNYAERTG 1221


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 381  ISKNTESNVEDIPSHKAKSVRKKL 452
            I K+ E  V D PS +  +VRK L
Sbjct: 1339 IGKHIEKTVNDTPSEEKATVRKNL 1362


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 592 CPWSKPLLAIG 624
           CPW K LLA+G
Sbjct: 340 CPWQKSLLAVG 350


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 328 KKMLFSFLSYTKLNMVSAPNN 266
           KK LFS L   +LN VS P N
Sbjct: 18  KKELFSLLIADELNFVSEPTN 38


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 450 LEIEQALDAILNKNTSSID***VLVKMSNLMKNFFTE 560
           + +E  LD ++N    ++    +L+KMS++MK   TE
Sbjct: 283 MSLESPLDIVVNAGAIALP---ILLKMSSIMKKKHTE 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,267
Number of Sequences: 5004
Number of extensions: 40665
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)