Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12l09
         (142 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   0.25 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   1.0  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   1.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   2.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   2.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   2.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   2.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   4.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      19   7.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    18   9.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    18   9.5  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 0.25
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 127 KLCVCVCFIYHIKWT 83
           K  + +CF+Y + WT
Sbjct: 274 KAAITICFLYVLSWT 288


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 134 LIKTLCVCVFYL 99
           LI  LCV VFYL
Sbjct: 246 LISFLCVLVFYL 257


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 124 LCVCVCFIYHIKWTSGK 74
           + +C  F Y   WT+GK
Sbjct: 18  IVMCQTFTYSHGWTNGK 34


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 118 VCVCFIY 98
           VC+CFIY
Sbjct: 369 VCMCFIY 375


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 118 VCVCFIY 98
           VC+CFIY
Sbjct: 338 VCMCFIY 344


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 118 VCVCFIY 98
           VC+CFIY
Sbjct: 389 VCMCFIY 395


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 118 VCVCFIY 98
           VC+CFIY
Sbjct: 338 VCMCFIY 344


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 24  DTKINYHF 1
           D +INYHF
Sbjct: 223 DQRINYHF 230


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = +1

Query: 70  DFCQTSILCDK*NTHTHKVFI 132
           DF   ++ CD  +   H+V +
Sbjct: 30  DFVDVTLACDGRSLKAHRVVL 50


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 127 KLCVCVCFI 101
           K C+CV FI
Sbjct: 486 KSCICVRFI 494


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 127 KLCVCVCFI 101
           K C+CV FI
Sbjct: 486 KSCICVRFI 494


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,741
Number of Sequences: 438
Number of extensions: 396
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 27
effective length of database: 134,517
effective search space used:  2555823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)