Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12l06
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.1  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   8.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.9  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   8.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 344 PISYFWLCLAMMCLCSAYIFM 282
           P+SY     A M +C+ ++FM
Sbjct: 300 PVSYLKAVDAFMSVCTVFVFM 320


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 490 ISPANVKLPEQVDWRK 537
           + P+N KLP   +W+K
Sbjct: 385 LDPSNRKLPAPANWKK 400



 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 716 SPPLQPLFPYCSEQSMRFCS 657
           SPPL   FP  + + ++ CS
Sbjct: 172 SPPLLGCFPRATNRDIKKCS 191


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 382 DMLHHEFVKTMNGFNKTAKHNKNLYMKGG 468
           D   H+ +   NG + T  HN+ L   GG
Sbjct: 395 DSARHQRIGGCNGLHTTTAHNRFLGGIGG 423


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 357 QAGHEQVWRHAPPRVREDYERLQQNCQTQQESVHEGWER 473
           Q+ H Q    A P+ ++  ++ Q   Q QQ+   +  +R
Sbjct: 818 QSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQR 856


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 509 FTLAGDMNLAPRTLPPFMYRF 447
           F   G +   PR +PP  YRF
Sbjct: 145 FRHIGPLTPFPRFIPPNAYRF 165


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 509 FTLAGDMNLAPRTLPPFMYRF 447
           F   G +   PR +PP  YRF
Sbjct: 386 FRHIGPLTPFPRFIPPNAYRF 406


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 509 FTLAGDMNLAPRTLPPFMYRF 447
           F   G     PR +PP +YRF
Sbjct: 367 FRYIGPPTPFPRFIPPNVYRF 387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,996
Number of Sequences: 438
Number of extensions: 4187
Number of successful extensions: 63
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)