Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12k24
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    40   2e-04
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    29   0.37 
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    28   0.87 
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    26   3.5  
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    25   6.1  

>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
 Frame = +3

Query: 381 MSTSNANRPQVPLRQKDFDQI---WGDLQEGIEQVYKK--QYMVKRRYIDLYTHVYNYC 542
           M+T N N   +P+ +K +D +   W  L+ G+ Q++++  + M   +Y++LYT ++NYC
Sbjct: 1   MTTLNTNDKDLPIVKK-YDSLNGTWDFLKTGVSQIFERLDEGMTITKYMELYTAIHNYC 58


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 489 YMVKRRYIDLYTHVYNYCTSVHHHS 563
           Y++ + Y+  YTH+Y Y  +++H +
Sbjct: 172 YVLTKSYLAKYTHIYRYYQTIYHQA 196


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 121 CSTRFHAVIDHITLFY-VLDAIRLSLFYYTTIYNHDSSNF 5
           C T+F A ID+I+L Y  L  I   L  Y   +   S NF
Sbjct: 296 CLTKFPATIDYISLHYDFLGQISSHLSSYKEKFEESSKNF 335


>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 450 DLQEGIEQVYKKQYMVKRRYIDLYTHVYNY 539
           D  +G+E VYKK+YM KR   D+  H+ ++
Sbjct: 145 DAVQGVE-VYKKKYMSKR---DIQEHIQDF 170


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 454 FKRESNKFTKNSTWSRDDT*ICILTYTIIVRRFIIIAPVA 573
           F+R +N+  K   W      +CI+   II+   +II P+A
Sbjct: 77  FRRGANRVRKKMWWKDMRMRLCII-IGIIILLVVIIVPIA 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,601
Number of Sequences: 5004
Number of extensions: 44356
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)