Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12k24
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.7  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   8.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -1

Query: 312 SLKNVSIRLLIPLQNAML*SLITSRNHSVGSDYFTLIFILH 190
           S+  +     +PL N     L  ++  +VG+  F  +F+L+
Sbjct: 370 SIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLN 410


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 123 VVAPVFTLSSTTLHFFMYLMR 61
           +V P+F L+    ++F YL R
Sbjct: 429 IVFPLFFLAINVFYWFAYLSR 449


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -3

Query: 364 VQINVETVIDFLF*LNIFTEKRID 293
           +++ VE+VI+F   L+ FT++ I+
Sbjct: 200 IKVQVESVIEFEPGLDSFTQQLIE 223


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 495 PCTVFCKLVRFPLEDRPISDQSPFAAAA 412
           PCT   +    P E    +D+ PF  +A
Sbjct: 117 PCTSVEEYAIIPQEIAGFADEGPFTTSA 144


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,153
Number of Sequences: 438
Number of extensions: 3116
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)