Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12k22
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    26   2.3  
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom...    25   5.3  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    24   9.3  

>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 180 VAKTGLLICRFVFVIASFHDAVWSMGIWRXP 272
           +A +G L+CRFV+    F   V+ +G W  P
Sbjct: 424 IAYSGPLMCRFVY--NKFQPGVFYVGKWSKP 452


>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 364 KYSHFI*HNFQYTKKAI 314
           KY H I H  QYTK AI
Sbjct: 34  KYEHLITHWAQYTKAAI 50


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 192 GLLICRFVFVIASFHDAVWSMGIW 263
           G  I RF  + A +   VWS+G W
Sbjct: 292 GRQITRFGTLTARWKTGVWSLGSW 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,483,769
Number of Sequences: 5004
Number of extensions: 26404
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)