Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12k22
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0144 + 5815403-5815520,5815551-5816314                           28   2.9  
09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,250...    28   2.9  

>10_02_0144 + 5815403-5815520,5815551-5816314
          Length = 293

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 248 PDSVVKRGNDKYKTTYEQTRLGDGSTSKMMSFV 150
           PD VVK G+++Y+   E+T+   G   +  S V
Sbjct: 236 PDPVVKEGDEQYRRLVEETKSAAGRERRRESAV 268


>09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,
            2509852-2511564,2512335-2512424,2512533-2512801,
            2513118-2513687,2513703-2514065
          Length = 1094

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 14/68 (20%), Positives = 32/68 (47%)
 Frame = -3

Query: 260  YTHAPDSVVKRGNDKYKTTYEQTRLGDGSTSKMMSFVFQN*TGFTSRIXRVKHNQKMMSF 81
            + H  +  +K  ND+++T  +  +  +     + + + +   GF+S I + K   + M  
Sbjct: 914  HVHRNEIALKELNDRFRTVSDSQKEVEKQNKVLHAIIKEKEKGFSSSISKEKEFTECMRC 973

Query: 80   VFQN*TGF 57
            V ++  GF
Sbjct: 974  VVESMRGF 981


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,672,683
Number of Sequences: 37544
Number of extensions: 142161
Number of successful extensions: 209
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)