Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12k22
         (382 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   1.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   2.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   2.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.9  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   8.5  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 361 YSHFI*HNFQYTKKAINDHVNDKYKTTYE 275
           +SH I +      + I+D+++D++K TY+
Sbjct: 258 HSHTIIYLSAKGHRPIDDNIDDEFKGTYK 286


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 283 TYEKGXRHIPMLQTAS*KEAMTNTKRHMS 197
           +Y  G  HIP++  +S   A ++   H+S
Sbjct: 115 SYTSGFYHIPVIGISSRDSAFSDKNIHVS 143


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 310 DHVNDKYKTTYEKGXRHIPMLQTAS*KEAMTNTKRHMSRPVLA 182
           + V  +YK   E   RHIP    AS  ++     R++S  V++
Sbjct: 410 ESVTSQYKNIREDDARHIP---HASVTDSENTVPRYLSPDVIS 449


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 260 YTHAPDSVVKRGNDKYKTTYEQTRLGDGSTSK 165
           +TH    V++R   K K+   + R    +TSK
Sbjct: 72  HTHEKKLVLERSKTKSKSPESRDRSNTSNTSK 103


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 227  GNDKYKTTYEQTRLGDGSTSK 165
            G+DK    Y+QT +G  +  K
Sbjct: 1614 GSDKDDVVYQQTGVGGATLDK 1634


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 87  VICFSKLNWLYE*NST 40
           ++C S L+W    NST
Sbjct: 295 ILCMSDLHWQLPHNST 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,872
Number of Sequences: 438
Number of extensions: 1556
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)