Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12k15
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 103 1e-22
01_05_0166 + 18844468-18845184,18847394-18847690 33 0.14
08_02_1012 + 23550314-23551504 30 1.3
04_04_0838 - 28550036-28550237,28550595-28550676,28550972-285510... 29 2.4
09_04_0736 - 19815427-19815642,19815782-19816903,19817006-198177... 29 4.1
02_05_1194 - 34881450-34881593,34882023-34882220,34882522-348826... 29 4.1
04_04_1670 - 35227581-35228168,35228250-35228435,35228529-35228801 28 5.4
12_02_0188 - 15158824-15159215,15159299-15159809,15159885-151600... 27 9.5
10_08_0637 - 19482088-19482108,19482280-19482881,19484611-19485397 27 9.5
07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056 27 9.5
04_04_1671 + 35231546-35232430,35232517-35232837 27 9.5
03_02_0715 + 10621789-10623243,10624074-10625018 27 9.5
03_02_0090 - 5564326-5567280 27 9.5
>06_03_0097 -
16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 103 bits (247), Expect = 1e-22
Identities = 53/109 (48%), Positives = 67/109 (61%), Gaps = 9/109 (8%)
Frame = +2
Query: 140 DSEDENFIRYGTPLEPYEEDEIPSKRKYQQQPDQYAV---------DDHGRRRFHGAFTG 292
D +DE+ + YGTP+E EED KR+ + Q D+ GRRRFHGAFTG
Sbjct: 4 DDDDEDLVVYGTPIER-EEDTSARKRRAVAEAGQLRALPAWKQEVRDEEGRRRFHGAFTG 62
Query: 293 GFSAGYMNSVGTPEGWTPTAFKSSRVDKAQISSQRPEDFMDEEDRGEFG 439
GFSAGY N+VGT EGWTP F SSR ++A++ Q F+DEED + G
Sbjct: 63 GFSAGYYNTVGTKEGWTPQTFTSSRKNRAEMKKQSIYSFLDEEDIKDMG 111
>01_05_0166 + 18844468-18845184,18847394-18847690
Length = 337
Score = 33.5 bits (73), Expect = 0.14
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Frame = +2
Query: 392 QRPEDFMDEEDRGEFGIAPRQV-QMRSNFSGQKRSRPSQF--H-EGTIPGEPVLQQLVQA 559
+R + + E R I+ + + R+ SG RPS H +G G L
Sbjct: 104 ERERELREREGRDALNISGEEAWKRRAAMSGSAAPRPSSSPPHGDGFAIGNSSSSGLGLG 163
Query: 560 V--HETAAVRMLCAMGWRPGQGTGER 631
TAA RM+ MGW+ GQG G++
Sbjct: 164 AGGQMTAAQRMMARMGWKEGQGLGKQ 189
>08_02_1012 + 23550314-23551504
Length = 396
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 624 PVP*PGLQPMAQSIRTAAVSWTACTNCCS 538
P P P Q A+ + AA WTAC +CC+
Sbjct: 206 PQPTPERQQEAE-VEAAATFWTACPSCCN 233
>04_04_0838 -
28550036-28550237,28550595-28550676,28550972-28551011,
28551342-28551416,28551448-28551543,28551710-28551805,
28551897-28551974,28552064-28552170,28552450-28552477,
28552777-28552898,28554106-28554172,28554336-28554508,
28554763-28554846,28555616-28555733,28556093-28556164,
28557026-28557118,28557484-28557636,28558000-28558086,
28559436-28559528,28560416-28560643,28561106-28561207,
28561390-28561596,28561798-28561846,28562385-28562537,
28562649-28562712,28562905-28563175,28564008-28564072,
28564184-28564337
Length = 1052
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +2
Query: 101 VLNIYVIS--NMTNSDSEDENFIRYGTPLEPYEEDEI 205
+LN+ VIS + T+ D +DE + GTPL+ +E ++
Sbjct: 440 MLNLVVISETSRTDDDDDDEKAMLIGTPLDATQESKL 476
>09_04_0736 - 19815427-19815642,19815782-19816903,19817006-19817707,
19817808-19817855,19817959-19818201,19819035-19819391
Length = 895
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 2/101 (1%)
Frame = +2
Query: 203 IPSKRKYQQ-QPDQYAVDDHGRRRFHGAFTGGFSAGYMNSVGTPEGWTPTAFKSSRVDKA 379
+P++ QQ QP+QY + + + A + V TP P A + +A
Sbjct: 791 LPTQMSQQQYQPEQYYMTQSNYGQLATVSSSNLQAHHQQIVATPAAQAPVAAQFPPAMQA 850
Query: 380 QISSQRPEDFMDEEDRGEFGIA-PRQVQMRSNFSGQKRSRP 499
++Q P D E +Q+ GQ + +P
Sbjct: 851 PAAAQAPVAAQASADEAERNRKYQATLQLAQRLLGQLQQKP 891
>02_05_1194 -
34881450-34881593,34882023-34882220,34882522-34882638,
34882753-34882908,34883192-34883341,34883418-34883527,
34883589-34883730,34883836-34884054,34887004-34887099,
34887187-34887489,34887575-34887624,34888003-34888114,
34888204-34888279,34888389-34888684,34888763-34888872,
34889071-34889120,34890439-34890488,34890636-34890816,
34890901-34890932
Length = 863
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +2
Query: 122 SNMTNSDSEDENFIRYGTPLEPYEEDEIPSKRKYQQQPDQYAVDDHGRRRFHGAFTGGF- 298
S SD E ++ + +P E+ + S+++ QQQ Q + R+R +G
Sbjct: 408 SPKVRSDQEYLIKVQQTSSQQPQEQQQQQSQQQQQQQSQQQQMQQSNRKRKQPTSSGAAN 467
Query: 299 SAGYMNSVGTPEGWTPT 349
S G N+VG P+
Sbjct: 468 STGTGNTVGPSTNSPPS 484
>04_04_1670 - 35227581-35228168,35228250-35228435,35228529-35228801
Length = 348
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 393 CEDICALSTRELLKAVGVHPSGVPTEFMYPAEKPPVKAPWNLLRPWSSTA 244
C DI AL+TR+ + A G P VP + P A + L +P S +
Sbjct: 139 CADITALATRDAIVASGGLPYDVPLGRLDSFAPAPSDAVFQLPQPTSDVS 188
>12_02_0188 -
15158824-15159215,15159299-15159809,15159885-15160015,
15160107-15160310,15160385-15161066,15161158-15161414,
15161491-15161631,15161731-15162136
Length = 907
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 421 RSRGVWYCSSSGADAQQFFRSE 486
+ +GV YC+S D ++FFR E
Sbjct: 29 KGKGVTYCNSVPPDVREFFRRE 50
>10_08_0637 - 19482088-19482108,19482280-19482881,19484611-19485397
Length = 469
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 410 MDEEDRGEFGIAPRQVQMRSNFSGQKRSRPSQF 508
M EDR GI+P V+M ++G R +QF
Sbjct: 406 MPPEDRARAGISPGLVRMSVGYNGTLEQRWAQF 438
>07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056
Length = 1109
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 423 IEGSLVLLLVRCRCAAIFPVRRDPDPHSFMKE 518
I G++V ++ R A FPV +DPDP S E
Sbjct: 727 IAGTVVFIMANLR--ARFPVDQDPDPESLSCE 756
>04_04_1671 + 35231546-35232430,35232517-35232837
Length = 401
Score = 27.5 bits (58), Expect = 9.5
Identities = 23/104 (22%), Positives = 38/104 (36%)
Frame = +2
Query: 176 PLEPYEEDEIPSKRKYQQQPDQYAVDDHGRRRFHGAFTGGFSAGYMNSVGTPEGWTPTAF 355
P+ PY P ++Y + R H GG + S P+ PT
Sbjct: 283 PVVPYNAFN-PPPQEYVLIKSDPPITQRRSPRQHTVQGGGGPT--IRSDSQPQTSNPTGQ 339
Query: 356 KSSRVDKAQISSQRPEDFMDEEDRGEFGIAPRQVQMRSNFSGQK 487
SR K + + +D ED+G P++ R +G++
Sbjct: 340 TGSRKRKLVLDNDEGDDDNKSEDKGSPNKLPKRTMPRKKLAGRQ 383
>03_02_0715 + 10621789-10623243,10624074-10625018
Length = 799
Score = 27.5 bits (58), Expect = 9.5
Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 2/98 (2%)
Frame = +2
Query: 137 SDSEDENFIRYGTPLEPYEEDEIPSKRKYQQQPDQYAVDDHGRRRFHGAFTGGFS--AGY 310
S+ ED+ YG LE EED + + + P + G R G S Y
Sbjct: 113 SEEEDDRVDEYGEDLEEEEEDLEEEEEEDDEAPRSKRMKKRGGRNVEGKLPLERSNRRRY 172
Query: 311 MNSVGTPEGWTPTAFKSSRVDKAQISSQRPEDFMDEED 424
+ + ++ + EDF DEED
Sbjct: 173 EEDMDFDPDMDEEEEEEDVDFDPEVEDEEEEDFEDEED 210
>03_02_0090 - 5564326-5567280
Length = 984
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +1
Query: 421 RSRGVWYCSSSGADAQQFFRSEEIQTLTVS*RNNTW*TSTAAVSTGSPRDS 573
R +W S GA ++ + T S N W TS AA + R S
Sbjct: 515 RDMAIWIASDCGATRNRWLVRAGVGIKTASKLNEQWRTSPAAAGASTERVS 565
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,948,879
Number of Sequences: 37544
Number of extensions: 427134
Number of successful extensions: 1268
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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