Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12k15
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical pr...   132   3e-31
U80451-7|AAB37841.3|  277|Caenorhabditis elegans Collagen protei...    33   0.13 
U18384-1|AAA62504.1|  293|Caenorhabditis elegans collagen protein.     33   0.13 
Z75543-4|CAA99871.1|  383|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical...    28   4.9  
U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.           28   6.5  
U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein rec...    28   6.5  
AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor...    28   6.5  
AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor medi...    28   6.5  
Z99942-1|CAB17068.2|  454|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z72507-13|CAH60789.1|  515|Caenorhabditis elegans Hypothetical p...    27   8.6  
Z72507-10|CAA96629.1|  531|Caenorhabditis elegans Hypothetical p...    27   8.6  
AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical ...    27   8.6  
AC024805-11|AAK39334.1|  141|Caenorhabditis elegans Hypothetical...    27   8.6  

>Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical
           protein R07E5.1 protein.
          Length = 812

 Score =  132 bits (318), Expect = 3e-31
 Identities = 67/157 (42%), Positives = 94/157 (59%), Gaps = 4/157 (2%)
 Frame = +2

Query: 167 YGTPLEPYEEDEIPSKRKYQQQPDQYAVDDHGRRRFHGAFTGGFSAGYMNSVGTPEGWTP 346
           YG   E  +E+     +K  Q  ++ A D+ G+RRFHGAFTGGFSAGY N+VG+ +GW P
Sbjct: 9   YGQEFEDDDEEGSSVSKKPTQIHEEIATDEKGKRRFHGAFTGGFSAGYWNTVGSKQGWVP 68

Query: 347 TAFKSSRVDKAQISSQRPEDFMDEEDRGEFGIAPRQVQMRSNF---SGQKRSRPSQFHEG 517
             F SSR ++ +   QR EDFMD ED GE+GI  R ++  + F   +GQKR    +    
Sbjct: 69  QVFSSSRNERGEQIKQRAEDFMDAEDLGEYGIGNRSIKQTAAFGEGAGQKRKMAWERDTT 128

Query: 518 TIPG-EPVLQQLVQAVHETAAVRMLCAMGWRPGQGTG 625
           +I     + + +V+ V  +  VRML +MGWR G+G G
Sbjct: 129 SISTITQMFEDVVKPVSNSIGVRMLRSMGWREGRGIG 165


>U80451-7|AAB37841.3|  277|Caenorhabditis elegans Collagen protein
           17 protein.
          Length = 277

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
 Frame = +2

Query: 176 PLEPYEEDEIPSKRKYQQQPDQYAVDDHGRRRFHGAFTGGFSAGYMNSVGTPEGWTPTAF 355
           PLE  ++ E P +    Q+P +          F+       S+ + +   TPE       
Sbjct: 47  PLETQDKTE-PQEMTEDQEPQELQDQMLQMIMFNQPPPISASSAHQDQPETPETQDQRDH 105

Query: 356 KSSRV---DKAQISSQRPEDFMDEEDRGEFGIAPRQVQMRSNFSGQKRSRPSQFHEGT 520
           + S+     K Q+ +Q P++  D +D  E      + +++ N   Q +S PSQ H+GT
Sbjct: 106 QDSQEHQESKDQMDAQEPQEPQDHKDHQE---PQDKTELQDNQEPQDKSAPSQPHQGT 160


>U18384-1|AAA62504.1|  293|Caenorhabditis elegans collagen protein.
          Length = 293

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
 Frame = +2

Query: 176 PLEPYEEDEIPSKRKYQQQPDQYAVDDHGRRRFHGAFTGGFSAGYMNSVGTPEGWTPTAF 355
           PLE  ++ E P +    Q+P +          F+       S+ + +   TPE       
Sbjct: 47  PLETQDKTE-PQEMTEDQEPQELQDQMLQMIMFNQPPPISASSAHQDQPETPETQDQRDH 105

Query: 356 KSSRV---DKAQISSQRPEDFMDEEDRGEFGIAPRQVQMRSNFSGQKRSRPSQFHEGT 520
           + S+     K Q+ +Q P++  D +D  E      + +++ N   Q +S PSQ H+GT
Sbjct: 106 QDSQEHQESKDQMDAQEPQEPQDHKDHQE---PQDKTELQDNQEPQDKSAPSQPHQGT 160


>Z75543-4|CAA99871.1|  383|Caenorhabditis elegans Hypothetical
           protein K01D12.4 protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 244 ILIWLLLIFSFAWNFIFFIWL*WSSVTDE 158
           +LI ++LI   A+  I F WL W +  DE
Sbjct: 45  VLICIILIVYLAFGAILFHWLEWENEVDE 73


>AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical
           protein Y57A10A.19 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +2

Query: 341 TPTAFKSSRVDKAQISSQRPEDFMDEEDRGEFGIAPRQVQMRSNFSGQKRSRPSQFHEGT 520
           T TA K SR+D+ ++  + P D   E+   +  +AP +V+  +    + R   S+   G+
Sbjct: 348 TATASKKSRMDELEVKQEPPSD--SEDYIAKTNLAPIRVEKSAEKVEKSRKSSSESSSGS 405


>U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.
          Length = 925

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 488 SSDRKNCCASAPDEEQY 438
           +SD KNC  +AP EE+Y
Sbjct: 233 ASDEKNCQTNAPSEEEY 249


>U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein
           receptor precursor protein.
          Length = 925

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 488 SSDRKNCCASAPDEEQY 438
           +SD KNC  +AP EE+Y
Sbjct: 233 ASDEKNCQTNAPSEEEY 249


>AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor
           RME-2 protein.
          Length = 925

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 488 SSDRKNCCASAPDEEQY 438
           +SD KNC  +AP EE+Y
Sbjct: 233 ASDEKNCQTNAPSEEEY 249


>AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor
           mediated endocytosis protein2 protein.
          Length = 925

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 488 SSDRKNCCASAPDEEQY 438
           +SD KNC  +AP EE+Y
Sbjct: 233 ASDEKNCQTNAPSEEEY 249


>Z99942-1|CAB17068.2|  454|Caenorhabditis elegans Hypothetical
           protein H13N06.2 protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -1

Query: 384 ICALSTR--ELLKAVG-VHPSGVPTEFMYPAEKPPVKAPWNL 268
           +CALST   E   A G V P     E  YP+  P V  PW L
Sbjct: 7   VCALSTVGVEGFGAPGIVPPESFIAERWYPSNLPTVMPPWKL 48


>Z72507-13|CAH60789.1|  515|Caenorhabditis elegans Hypothetical
           protein F17C11.7b protein.
          Length = 515

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 257 GHQRHTDLVVADIFFCLEFHLLHMALVEFRNG 162
           G + H  +++A I FCL  H++ + L E R G
Sbjct: 472 GRKIHRAILLAIIAFCLYAHMMDINLNEIRRG 503


>Z72507-10|CAA96629.1|  531|Caenorhabditis elegans Hypothetical
           protein F17C11.7a protein.
          Length = 531

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 257 GHQRHTDLVVADIFFCLEFHLLHMALVEFRNG 162
           G + H  +++A I FCL  H++ + L E R G
Sbjct: 488 GRKIHRAILLAIIAFCLYAHMMDINLNEIRRG 519


>AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical
           protein D1037.1 protein.
          Length = 786

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 584 MLCAMGWRPGQGTGE 628
           ML  MGWRPG+G G+
Sbjct: 644 MLEKMGWRPGEGLGK 658


>AC024805-11|AAK39334.1|  141|Caenorhabditis elegans Hypothetical
           protein Y51H7C.3 protein.
          Length = 141

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 134 NSDSEDENFIRYGTPLEPYEEDEIPSKRKYQQQPDQYAVDDHGRRRFHGA 283
           N+DS +      G P++     E  SKR +QQ+ +QYA ++  R ++  +
Sbjct: 76  NTDSSNVTDHYCGLPIDSSTPKET-SKRDFQQKHEQYAEEEGERAKWQSS 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,079,168
Number of Sequences: 27780
Number of extensions: 366862
Number of successful extensions: 1315
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)