Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12k15
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               27   0.12 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    25   0.82 

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 6/119 (5%)
 Frame = +2

Query: 296 FSAGYMNSVGTPEGWTPTAFKSSRVDKAQISSQR--PEDFMDEEDRGEFGIAPRQVQMRS 469
           F AG +   G P+  T         D   I SQ+  P     +++R      P  +  R+
Sbjct: 70  FVAGGIQQAGKPKEETDDK-DDDESDNENIKSQKEFPNSSSSDDER------PNSIHQRA 122

Query: 470 NFSGQKRSRPSQFHEGTIPGEPVLQQLVQAVHET----AAVRMLCAMGWRPGQGTGERL 634
           +FS       +   +      P+L Q      E        ++L  MG+ PG+G G++L
Sbjct: 123 SFSLNTDGDIAGLRKKKHKVNPLLMQSGMGSWEVYTKGIGAKLLLQMGFEPGKGLGKQL 181


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 606 LQPMAQSIRTAAVSWTACTN 547
           ++PM + I T A  W A TN
Sbjct: 341 IRPMVKQIDTVAAEWPATTN 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,013
Number of Sequences: 438
Number of extensions: 3907
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)