Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12k12
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    31   0.14 
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    28   1.3  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    28   1.7  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    28   1.7  
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom...    27   2.3  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   3.0  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    27   4.0  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    27   4.0  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    27   4.0  
SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc...    26   7.0  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   7.0  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   7.0  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   7.0  

>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +3

Query: 561 RRYRLRINGSANRGHHNTLLQGKTDHGS----EDSPDGSFSRKLLDTN 692
           RR RL  NG+AN   HN       D GS    + + DG FS+   + N
Sbjct: 218 RRKRLVFNGNANESQHNLKRMSSGDSGSSVKQQSTRDGPFSKSFPNGN 265


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 481 VAGILLSSYSTDATTNDHIVNIFSGIFAGIGCALTGQQTEVIITHF 618
           VA   L   + +   NDH VN   G  AGI   LT    + + T F
Sbjct: 87  VAFSKLKHLTENLAMNDHAVNFLCGTSAGIFATLTSYPLDTMRTKF 132


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 52  TSPILSPCLKQQKMENPTLTDARQTDRVENRTEDLH 159
           +SP++   + ++  ENPT +  R+ D V+   + LH
Sbjct: 51  SSPVVQTVVHKEATENPTASSYRKDDSVKQNEKLLH 86


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -3

Query: 470 KPASAMNLGMLNIFTIARHHDSKSNLMTTIITGTRAMSTSHIFNNSSFSWPSSLIAF 300
           KP   MN   +   T++R   S S   T  +T T    TS+ F+N +    S+L+AF
Sbjct: 379 KPTLLMNTSDITRVTLSRVGMSVSAARTFDLTFTLRSGTSYQFSNINRVEQSALVAF 435


>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 663 SFSRKLLDTNTSRLSLHGI 719
           S  RK +D N SR++LHGI
Sbjct: 3   SLLRKAIDVNRSRITLHGI 21


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = +3

Query: 537 CEYILWHIRRYRLRINGSANRGHH 608
           C ++ ++ RR+++R++ SAN G +
Sbjct: 310 CIFLYFYFRRFKIRMSDSANEGKY 333


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +1

Query: 136 ENRTEDLHLDRVVASQPEIGPT 201
           ++RT+D+H+D+++   PE  P+
Sbjct: 280 KDRTQDIHIDKLLIDHPEKRPS 301


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = -3

Query: 530 SLVVASVE*LESRMPATVRHKPASAMNLGMLNIFT--IARHHDSKSNLMTTIITGTRAMS 357
           S+ ++S+  + S MP    HKPAS  N+G + I +   +R   S S +  + +      S
Sbjct: 480 SVSLSSLSNVNSSMP----HKPASQSNVGPVRISSNRRSRKFSSSSRVSVSNLLAGSPPS 535

Query: 356 TSHIFNNSSFSWPSSLIAFNM 294
            S    ++S S+ ++  AF++
Sbjct: 536 PSSSTKSASSSYSTTTPAFSI 556


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 154 LHLDRVVASQPEIGPTPPDGGYGW 225
           L++D+VV S+P  GP PP     W
Sbjct: 520 LNVDQVVMSKPAGGPKPPGPNPHW 543


>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 344 FNNSSFSWPSSLIAFNMINPYNVNTAGTVMW 252
           F  S F   + ++   M+ P N+ TAGTV W
Sbjct: 87  FRMSCFVLTNLVVTAGMLQP-NLGTAGTVFW 116


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 353 SHIFNNSSFSWPSSLIAFNMIN 288
           ++IF+  SFSW SS I F   N
Sbjct: 177 ANIFSKLSFSWISSFIKFGYTN 198


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 478  TVAGILLSSYSTDATTNDHIVNIFSGI 558
            +V GI+L S S D     HIVN  SGI
Sbjct: 1101 SVVGIILGSPSVDNYGQMHIVNHSSGI 1127


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 53  PHRFCLHVSNSKKWKI 100
           P+ +C+ ++NS  WKI
Sbjct: 669 PYSYCMEITNSSGWKI 684


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,331,932
Number of Sequences: 5004
Number of extensions: 72583
Number of successful extensions: 219
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)