Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12k12
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 32 0.45
11_06_0349 + 22565405-22566279,22567774-22569772,22570360-225704... 30 2.4
12_01_1048 + 10770461-10770612,10770721-10770730,10771457-107716... 29 4.2
05_01_0493 + 4113869-4116728,4116859-4117370 29 4.2
04_04_1268 - 32262994-32263017,32263411-32263488,32263653-322638... 29 5.5
03_06_0218 - 32442904-32443347,32444426-32444626,32446584-32447156 29 5.5
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 29 5.5
07_03_0327 + 16817149-16817438,16818029-16818224,16818309-168196... 28 7.3
01_06_0459 + 29538025-29538579,29539190-29539354,29539448-295395... 28 7.3
01_03_0088 + 12327339-12328092,12329474-12329601,12330249-123304... 28 7.3
12_02_0629 - 21360831-21361310,21361391-21361663,21362212-213624... 28 9.7
07_01_0072 - 525351-525494,526029-526256,526345-526458,527616-52... 28 9.7
06_03_1028 - 27004229-27004566,27005554-27005772,27006254-270063... 28 9.7
05_02_0137 + 6996336-6996415,6998240-6998351,6999292-6999453,699... 28 9.7
01_06_1200 - 35362412-35362432,35362526-35362715,35362799-353628... 28 9.7
>01_06_0293 - 28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 32.3 bits (70), Expect = 0.45
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 25 CAGIGCSTRTSPILSPCLKQQKMENPTLTDARQTDRVENRTEDLHLDRVVASQP 186
C+ C+T SP+LSP + Q T AR + +E E DR++ +P
Sbjct: 1336 CSACRCATSRSPMLSPVVTHQLDAGSTPPIARDGESMEMMKEFYSGDRILPKKP 1389
>11_06_0349 +
22565405-22566279,22567774-22569772,22570360-22570478,
22570835-22571117
Length = 1091
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 475 LTVAGILLSSYST--DATTNDHIVNIFSGIFAGIGCALTGQQTEVIITHFFR 624
+ VAG++ S + D T + H+V++ + A +G LT + II H ++
Sbjct: 389 VVVAGLIASKMKSKIDLTLDQHLVDVDEALSAELGSNLTTEGVTQIINHCYK 440
>12_01_1048 +
10770461-10770612,10770721-10770730,10771457-10771624,
10771668-10772017,10772107-10772508,10772940-10773318,
10773801-10774046
Length = 568
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 585 GSANRGHHNTLLQGKTDHGSEDSPDGSFSRKLLDTNTSRLSL-HGIHWRRCSHDLRCYCD 761
G ++ HNT+ +G H + SP+ S K + +++SL + I+W +H
Sbjct: 475 GESSSLGHNTITEGNNRHTNVLSPELVTSLKRTNERVAQISLTNSIYWN--AHTFALTDS 532
Query: 762 AKLSXFG 782
KL FG
Sbjct: 533 GKLYAFG 539
>05_01_0493 + 4113869-4116728,4116859-4117370
Length = 1123
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +1
Query: 127 DRVENRTEDLHLDRVVASQPEIGPTPPDGGYGWLIVVSAVIYHITVPAVLTLYGLIILKA 306
DR E D L RV P P G YG++ + IT + + +G+++L+
Sbjct: 918 DRYEACLADFGLARVADDGASSSPPPFAGSYGYIAPEYGCMTKITTKSDVYSFGVVLLEM 977
Query: 307 I 309
I
Sbjct: 978 I 978
>04_04_1268 -
32262994-32263017,32263411-32263488,32263653-32263800,
32263890-32264127,32264210-32264420,32264499-32264680,
32264765-32264866,32265009-32266317,32266906-32266988,
32267436-32267559
Length = 832
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/59 (27%), Positives = 35/59 (59%)
Frame = +1
Query: 385 VVIRLLLESWCRAIVKIFNMPRFMALAGLCLTVAGILLSSYSTDATTNDHIVNIFSGIF 561
V+I LLL S+C+ ++ + R ++ +G ++ +G+ + + AT+N ++F GI+
Sbjct: 91 VLIYLLLISFCKCDDQLTQVNRLISPSGKLVSKSGVFALGFFSPATSNQ---SLFLGIW 146
>03_06_0218 - 32442904-32443347,32444426-32444626,32446584-32447156
Length = 405
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +2
Query: 11 PMSGAAPGSAAQLGPHRFCLHVSNSKKWKIQ---LLPTPDRPTGSKT 142
P S P +A GP+ L S+S WK Q L RP GS+T
Sbjct: 45 PTSATPPPAAVPEGPYLAALKGSHSSAWKQQQETLSQARKRPGGSQT 91
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 77 SNSKKWKIQLLPTPDRPTGSKTGQKIYIWTGLSL 178
+NS+ W++ +P+ DR GS +YI+ L L
Sbjct: 710 ANSQWWQMPTMPSADRGGGSGIFSNVYIFVALLL 743
>07_03_0327 +
16817149-16817438,16818029-16818224,16818309-16819642,
16819925-16820097,16820257-16820503,16820599-16820893,
16820934-16820982,16821357-16821562
Length = 929
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +1
Query: 64 LSPCLKQQKMENPTLTDARQTDRVENRTEDLHLDRVVASQPEIGPTPPDGGYGWL 228
L P L +K+ P D +N+T D+ L V + E+ + Y WL
Sbjct: 326 LEPLLPPKKLPQPAGESNVALDSAQNQTADIALGHFVPADTELTNSVTKFSYRWL 380
>01_06_0459 +
29538025-29538579,29539190-29539354,29539448-29539585,
29539685-29539836,29539949-29540057,29540281-29540379,
29541051-29541116,29541208-29541315,29541428-29541553
Length = 505
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 499 SSYSTDATTNDHIVNIFSGIFAGIGCALTGQQTEVIITHF 618
+ +STD TT D +V IF G + +Q E+ +THF
Sbjct: 262 TGFSTDPTTVDQLVEANPAIFT--GSEVRVEQPEMPLTHF 299
>01_03_0088 +
12327339-12328092,12329474-12329601,12330249-12330474,
12332638-12332765,12332880-12333033,12333408-12333841
Length = 607
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +2
Query: 434 YSTCRGSWRLPAYA*R*PAFCSLATPLMPQPMT 532
YS C R P A R PAF A P MP+P T
Sbjct: 134 YSECP---RAPPVAIREPAFLPFAPPTMPRPWT 163
>12_02_0629 -
21360831-21361310,21361391-21361663,21362212-21362488,
21362590-21362735,21363207-21363416
Length = 461
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +1
Query: 283 YGLIILKAIREEGHEKEELLKIWDVDIALVPVIMVVIRLLLES 411
+G + +KAI + GH+K LK+ ++ A+ I+ + RLL E+
Sbjct: 296 FGFLHIKAIDDAGHDKAVKLKVLGLE-AVDRAIVQLARLLWEA 337
>07_01_0072 -
525351-525494,526029-526256,526345-526458,527616-527747,
529086-529265,529376-529507,529879-530055,530536-530718,
530894-530938,531192-531306,531770-532128,532700-532939
Length = 682
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 573 LRINGSANRGHHNTLLQGKTDHGSEDSPDG 662
+R G A G+H+ ++G+ D+G E +G
Sbjct: 68 VRSEGHARSGYHSEEVEGEADNGGEGEAEG 97
>06_03_1028 -
27004229-27004566,27005554-27005772,27006254-27006390,
27007172-27007509
Length = 343
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 300 EGDQRRGP*KRRIVENMGRRHSPRTSNYGCHKVTLGVMVSSDREDIQHA 446
E DQ + +RR+ ++ RR P+T + TL + DR+ I A
Sbjct: 119 EFDQEKRSCRRRLSDHNARRRKPQTDVFAFGSGTLPRSLFDDRQQISFA 167
>05_02_0137 +
6996336-6996415,6998240-6998351,6999292-6999453,
6999755-6999874,6999947-7000108
Length = 211
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +1
Query: 358 DIALVPVIMVVIRLLLESWCRAIVKIFNMPRFMALAGLCLTVAGILLSSYSTDATTNDHI 537
+ + +P I+ + L SW VK + + LA C+TV SS+S N HI
Sbjct: 41 EFSCIPYILALFSCLTYSWYGFPVKQVMLMASLILAVFCMTV---FFSSFSIH---NHHI 94
Query: 538 VNIFSG 555
+F G
Sbjct: 95 RKVFVG 100
>01_06_1200 -
35362412-35362432,35362526-35362715,35362799-35362899,
35362985-35363116,35363204-35363302,35363493-35363568,
35363649-35363941,35364032-35364160,35364332-35364480,
35364562-35364633,35364728-35364776,35365039-35365107,
35365201-35365256,35365357-35365429,35365508-35365584,
35365847-35365934,35366086-35366259,35366358-35366473,
35366681-35366984,35367084-35367146,35367224-35367286,
35367393-35367506,35368672-35368675,35368894-35368952,
35369024-35369098,35369691-35369798,35372331-35372792
Length = 1071
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 19 WSCAGIGCSTRTSPILSP 72
WS AG+GC T+ I+SP
Sbjct: 55 WSSAGVGCPTKKLVIVSP 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,444,037
Number of Sequences: 37544
Number of extensions: 507490
Number of successful extensions: 1474
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1474
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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