Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12k12
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.46 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.60 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   0.80 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.8  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    21   9.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 94  ENPTLTDARQTDRVENRTEDLHLDRVVASQ 183
           E PT ++A  TD  + RTE++ LDR   +Q
Sbjct: 325 EYPT-SNATDTDGTKERTEEVALDRTPVTQ 353


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 130 RVENRTEDLHLDRVVASQPEIGPTPPDGGYGW 225
           RV+N T+  + D      P+  P PPD   GW
Sbjct: 646 RVQNATDTTNFDEY---PPDSDPPPPDDISGW 674


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 636 HGSEDSPDGSFSRKLLDTNTSRLSLHGIHWRRCSHDL 746
           H  + S +  F R+ L+  T++  LHG+H     H L
Sbjct: 110 HKEQLSREQRFLRRRLEQLTNQTGLHGLHGLHGLHGL 146


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -3

Query: 419 RHHDSKSNLMTTIITGTRAMSTSHIFNNSSFSWPSSLIAFNMINPYNVNTAGT 261
           R    + N ++ I   +R +        + F W + L     IN YNVN+ GT
Sbjct: 411 RRRTPRYNSVSKIDRASRIVFPLFFLAINVFYWFAYLSRSERINYYNVNSNGT 463


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 465 GKRHEPRHVEYLHDRSTP*LQE*PYDNHN 379
           GK  EP   E   D S+P   + P  NH+
Sbjct: 612 GKYEEPTVGEISQDGSSPHFHQSPSQNHS 640


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 262 VPAVLTLYGLIILKAIREEG 321
           +PAVL+  G+I+   ++ EG
Sbjct: 378 LPAVLSRIGIILASPLKREG 397


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 14   MSGAAPGSAAQLGPHRFCLH 73
            + GAA  SAA L P+   LH
Sbjct: 1719 LGGAAEASAAGLHPNNTLLH 1738


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 14   MSGAAPGSAAQLGPHRFCLH 73
            + GAA  SAA L P+   LH
Sbjct: 1715 LGGAAEASAAGLHPNNTLLH 1734


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 231 YQPTVTTVRWRWSNFWL 181
           Y P++  V   W +FW+
Sbjct: 249 YLPSILIVMLSWVSFWI 265


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 588 SANRGHHNTLLQGKTDHGSEDSPDGSF 668
           S +  H  +L++  +  G+ D+P+G F
Sbjct: 36  SQDTSHFASLVRNASVSGNLDAPEGGF 62


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 759 HNSTVDHDYNVASVYRAKIAD*YWYQAISY*RSHPDYP 646
           H+ST+D D+ + +  +++  D Y    IS  +  P  P
Sbjct: 242 HSSTLDIDHKMLTPIKSEPIDAYEMHQISKKKLSPATP 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,762
Number of Sequences: 438
Number of extensions: 6030
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)