Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12k11
         (192 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z93397-5|CAD89745.1|  375|Caenorhabditis elegans Hypothetical pr...    26   4.3  
Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical
           protein C18A3.9 protein.
          Length = 122

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 166 LIINIFIFEYSIVIKLNINTCINNRLI 86
           ++ N F+F Y I + L +N C NN LI
Sbjct: 82  IVNNFFVFMYYIFLVL-VNVCNNNLLI 107


>Z93397-5|CAD89745.1|  375|Caenorhabditis elegans Hypothetical
           protein ZC482.8 protein.
          Length = 375

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 190 FFLD*THKLIINIFIFEYSIVIKLNINTCINNRLITKCMCT 68
           FFL+  H +I+       ++V  + I  C+N+  + +C CT
Sbjct: 59  FFLNLVHLVILTRRALRTNLVYTVMIGICLND--LIQCFCT 97


>Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical
           protein ZC482.6 protein.
          Length = 376

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -3

Query: 190 FFLD*THKLIINIFIFEYSIVIKLNINTCINNRLITKCMCT 68
           FFL+  H  ++       ++V  + I  C+N+  + +C CT
Sbjct: 58  FFLNMVHLAVLTRKALRTNLVYTVMIGICLND--LIQCFCT 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,324
Number of Sequences: 27780
Number of extensions: 33610
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)