Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12k05
         (271 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    25   2.5  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    25   2.5  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   5.7  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    23   5.7  

>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 270 FFFKCWICLMLNFFSFFL 217
           F F CWICL    F F +
Sbjct: 121 FPFLCWICLWSMIFHFII 138


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -2

Query: 105 FIEFLLAVLSS-YELSKPQ-APPRRYV 31
           FIEFLL V ++ Y L KP+ +P   YV
Sbjct: 51  FIEFLLLVFAAYYVLRKPRTSPDNNYV 77


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -1

Query: 271 FFF*MLDL---FNVEFFFFLSKIYLMISHAGAFTSV*FSYLSYRC 146
           FFF +  L   F+  F FFLS+I+++  +  +F  + F +  + C
Sbjct: 120 FFFLLFFLSFSFSFSFLFFLSQIFIV--YFSSFPILHFLFFFFLC 162


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -1

Query: 259 MLDLFNVEFFFFLSKIYLMISHAGAFTSV*FSYLSYRCRVNVSI 128
           M  L  +  FFFL    + IS  G F SV  S  +   +VNV +
Sbjct: 1   MSQLLFLRRFFFLFCFIIRISCTGVFESVIKSSENVPDKVNVKL 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,137,014
Number of Sequences: 5004
Number of extensions: 20441
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)