Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12k05
         (271 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ304411-1|CAC39104.1|  187|Anopheles gambiae LDL receptor protein.    23   2.6  
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    22   4.6  
CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.          21   6.1  

>AJ304411-1|CAC39104.1|  187|Anopheles gambiae LDL receptor protein.
          Length = 187

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 42  EAALAVLIIRKNLEQPRGI 98
           E  +   ++ K+LEQPRGI
Sbjct: 150 EEGIRSALVWKDLEQPRGI 168


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 220 SKIYLMISHAGAFTSV*FSYLSYRCRVNVSITICI 116
           S+I  + SH G+  +  F++L +   VN+ I++ +
Sbjct: 136 SRIKEIESHFGSVVASYFTFLRWLFSVNIVISVLL 170


>CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.
          Length = 295

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 168 N*TDVKAPAWD 200
           N TD +APAW+
Sbjct: 282 NPTDARAPAWE 292


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,401
Number of Sequences: 2352
Number of extensions: 4725
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 563,979
effective HSP length: 54
effective length of database: 436,971
effective search space used: 15293985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)