Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12k05
         (271 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83731-2|CAB06023.2|  450|Caenorhabditis elegans Hypothetical pr...    27   1.4  
AL032641-4|CAA21647.1|  454|Caenorhabditis elegans Hypothetical ...    25   5.6  
AF016685-6|AAG24147.1|  338|Caenorhabditis elegans Seven tm rece...    25   7.3  
Z81105-5|CAB03218.2|  331|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AL021474-1|CAA16308.1|  343|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z83731-2|CAB06023.2|  450|Caenorhabditis elegans Hypothetical
           protein M04C9.4 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 80  RTAKRNSINSIWYANCDRDIYSTSVTE 160
           R   RNSI+S  Y N D ++Y  S+ E
Sbjct: 78  RCTSRNSIDSEIYENSDEEVYDESMYE 104


>AL032641-4|CAA21647.1|  454|Caenorhabditis elegans Hypothetical
           protein Y5F2A.4 protein.
          Length = 454

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 181 TSV*FSYLSYRCRVNVSITICIP 113
           TS+     S RCR+ V + +CIP
Sbjct: 410 TSIVLLNKSIRCRMTVRVPVCIP 432


>AF016685-6|AAG24147.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 84 protein.
          Length = 338

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 271 FFF*MLDLFNVEFFFFLSKIYLMISHAGAFT 179
           F +  + +F+  + +  SK+YLM    G+FT
Sbjct: 111 FIYRFVAIFHHRYLWMFSKLYLMFWVLGSFT 141


>Z81105-5|CAB03218.2|  331|Caenorhabditis elegans Hypothetical
           protein R05D7.5 protein.
          Length = 331

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 142 VNVSITICIPN*VYRIPLGC 83
           VN  I +CIPN    +P GC
Sbjct: 30  VNRHIYVCIPNSFSPLPTGC 49


>AL021474-1|CAA16308.1|  343|Caenorhabditis elegans Hypothetical
           protein Y32F6A.1 protein.
          Length = 343

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +2

Query: 125 CDRDIYSTSVTEI*KLNGCESPCVGYH*IDLRKKEKKFNIKQIQHLKK 268
           C RD        I   NG ++    +  ID++ +++K N ++ Q  +K
Sbjct: 162 CGRDEMGVLRPNIILFNGLQNDFSFFQVIDIKSRKRKRNTREFQSRRK 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,172,043
Number of Sequences: 27780
Number of extensions: 109677
Number of successful extensions: 223
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)