Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12j01
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...   155   7e-39
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    29   0.81 
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.6  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    25   10.0 
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    25   10.0 

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score =  155 bits (375), Expect = 7e-39
 Identities = 72/95 (75%), Positives = 85/95 (89%), Gaps = 1/95 (1%)
 Frame = +1

Query: 391 QVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKRISVEN-EGDKVEYRVWNPFRSK 567
           +VIIEPHRH GVFIARGKED LVT+NLVPG  VY EKRISV++ +G KVEYRVWNPFRSK
Sbjct: 72  KVIIEPHRHAGVFIARGKEDLLVTRNLVPGESVYNEKRISVDSPDGTKVEYRVWNPFRSK 131

Query: 568 LAAAIMGGVDAIHMAPGSRVLYLGAASGTTVSHVS 672
           LAA I+GG+D I++ PG+RVLYLGAA+GT+VSHV+
Sbjct: 132 LAAGILGGLDNIYIKPGARVLYLGAANGTSVSHVA 166


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 496 EKRISVENEGDKVEYRVWNPFRS 564
           E R+   N+G   +YR WN FRS
Sbjct: 11  ETRLCPSNQGSAKKYRPWNDFRS 33


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 533 WSTESGIRSDRNWQLQLWVEWMLYTWPL 616
           WS+   IR   N +L  W EW     PL
Sbjct: 277 WSSVDEIRDVHNKRLDAWSEWKQKLLPL 304


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -1

Query: 587 PIIAAANFDLNGFQTLYSTLSPSFSTDILFS 495
           PI+A   F ++G+   Y+ L+P F++ ILFS
Sbjct: 144 PIVAGMGF-VSGY---YTNLTPVFNSSILFS 170


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 463 KNLVPGSEVYGEKRISVENEGDKVEYRVWNPFRSKLA 573
           K L P S       +++ NEG K  +  +NP R+++A
Sbjct: 200 KPLPPNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIA 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,141
Number of Sequences: 5004
Number of extensions: 31358
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)