Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12j01
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1258 + 35290183-35290198,35290292-35290599,35290844-352909...   159   2e-39
05_01_0521 + 4500268-4500283,4500364-4500680,4500999-4501094,450...   157   6e-39
02_01_0317 - 2128660-2128776,2129281-2129364,2129463-2129543,213...    29   2.6  
05_03_0413 + 13639476-13639537,13639702-13639783,13639865-136399...    29   4.5  
01_07_0168 + 41621762-41621768,41621892-41622827,41622943-41623898     28   5.9  

>02_05_1258 +
           35290183-35290198,35290292-35290599,35290844-35290939,
           35291067-35291144,35291224-35291400,35292738-35292806,
           35292917-35293093
          Length = 306

 Score =  159 bits (385), Expect = 2e-39
 Identities = 74/95 (77%), Positives = 85/95 (89%), Gaps = 1/95 (1%)
 Frame = +1

Query: 391 QVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKRISVENE-GDKVEYRVWNPFRSK 567
           +V++ PH+H GVFIA+ KEDAL TKN+VPG  VYGEKRISV+NE G KVEYRVWNPFRSK
Sbjct: 67  KVVVVPHKHNGVFIAKAKEDALCTKNMVPGESVYGEKRISVQNEDGTKVEYRVWNPFRSK 126

Query: 568 LAAAIMGGVDAIHMAPGSRVLYLGAASGTTVSHVS 672
           LAAA++GGVD I +APG+RVLYLGAASGTTVSHVS
Sbjct: 127 LAAAVLGGVDNIWIAPGTRVLYLGAASGTTVSHVS 161


>05_01_0521 +
           4500268-4500283,4500364-4500680,4500999-4501094,
           4501219-4501296,4501333-4501557,4502842-4502910,
           4502946-4503200
          Length = 351

 Score =  157 bits (382), Expect = 6e-39
 Identities = 73/95 (76%), Positives = 84/95 (88%), Gaps = 1/95 (1%)
 Frame = +1

Query: 391 QVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKRISVENE-GDKVEYRVWNPFRSK 567
           +V++ PH+H GVFIA+ KEDAL TKN+VPG  VYGEKRISV+NE G KVEYRVWNPFRSK
Sbjct: 70  KVVVVPHKHDGVFIAKAKEDALCTKNMVPGESVYGEKRISVQNEDGTKVEYRVWNPFRSK 129

Query: 568 LAAAIMGGVDAIHMAPGSRVLYLGAASGTTVSHVS 672
           LAAA++GGVD I +APG+RVLYLG ASGTTVSHVS
Sbjct: 130 LAAAVLGGVDNIWIAPGTRVLYLGGASGTTVSHVS 164


>02_01_0317 -
           2128660-2128776,2129281-2129364,2129463-2129543,
           2130230-2130407,2130530-2130673,2130780-2130826,
           2131149-2131205,2131989-2132087,2132301-2132423,
           2132514-2132636,2132859-2132972,2133612-2133800,
           2134408-2134574,2134707-2134791,2134891-2135085,
           2135162-2135251,2135418-2135603,2135885-2135959,
           2136757-2136957
          Length = 784

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 546 LESVQIEIGSCNYGWSGCYTHGPW--VKSFVSRSCQWNNS 659
           +E +Q   GS    W+ C+T+G W  VK  V+    + NS
Sbjct: 622 IEGIQKSDGSWYGSWAVCFTYGTWFGVKGLVAAGRTFKNS 661


>05_03_0413 +
           13639476-13639537,13639702-13639783,13639865-13639940,
           13640016-13640101,13640294-13640370,13641138-13641194,
           13641294-13641378,13642331-13642417,13642603-13642683,
           13643748-13643885,13643962-13644147,13644242-13644268
          Length = 347

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = +1

Query: 427 FIARGKEDALVTKNLVPGSEVYGEKRISVENEGDKVEYRVWNPFRSKLAAAIMGGVD--A 600
           F+A+  E  LVTK      EV  + +   E+    +  + +N F  KL+  + GG D  A
Sbjct: 235 FLAKADEQVLVTKISPKSGEVLCKHKDKAEHFAHGLCEKCYNKF-MKLSGGLEGGSDPPA 293

Query: 601 IHMAPGSRVLYLGAASGTTVS 663
              A   R+     A GT  S
Sbjct: 294 FQRAEKQRLEAAKNAKGTAAS 314


>01_07_0168 + 41621762-41621768,41621892-41622827,41622943-41623898
          Length = 632

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 541 RVWNPFRSKLAAAIMGGVDAIHMAPG-SRVLYLGAASGTTVSHV 669
           R++NP R  L A    G+D I  A G   V YL A+S    S V
Sbjct: 354 RIYNPDREALDALRNSGIDLILDAGGFDTVSYLAASSSNAASWV 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,588,872
Number of Sequences: 37544
Number of extensions: 210642
Number of successful extensions: 579
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)